Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq148 100 8e-17 seq94 96.9 1e-15 >seq148 Length=19139 Score = 100 bits (110), Expect = 8e-17 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 23595 GTGCCATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACGT 23654 |||||| |||||||||||||||||||||||||| |||||| |||||||||||| || Sbjct 540 GTGCCACTCGGTCTTTTCCTTGCGCTCGCCGGTGGCCTTGTCGCGCCAGGTTTCCGAGGT 599 Query 23655 GGCCAGGCTGATGTTGCAGACGGCATCGCCGTTTTGCAGGTAGCGCACTTCCGGGTCATT 23714 ||| | || | |||| |||| |||||||| | ||| | || | ||||||||| Sbjct 600 GGCGATGCGCAGGTTGGCGACGCGGTCGCCGTTGTTCAGCGAACGGATTTCCGGGTCGCG 659 Query 23715 ACCCAGGCGGCCAATCAGGTCTACTTTGTT 23744 ||||| ||| || ||| || ||||| Sbjct 660 GCCCAGATTGCCGATGAGGATGACCTTGTT 689 >seq94 Length=41210 Score = 96.9 bits (106), Expect = 1e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 23587 ACGACGCGGTGCCATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTT 23646 ||||| |||||| |||||||||||||||||||||||||| |||||| ||| Sbjct 29369 ACGACCGCGTGCCACTCGGTCTTTTCCTTGCGCTCGCCGGTGGCCTTGTCGCGCCATTGC 29310 Query 23647 TCCGACGTGGCCAGGCTGATGTTGCAGACGGCATCGCCGTTTTGCAGGTAGCGCACTTCC 23706 ||||||||||| | || | |||| |||| |||||| | | ||| ||| | |||| Sbjct 29309 TCCGACGTGGCGATGCGCAGGTTGGCGACGCGGTCGCCGCTGTTCAGCGTGCGGATTTCC 29250 Query 23707 GGGTCATTACCCAGGCGGCCAATCAGGTCTACTTTGTT 23744 ||||| || |||||| ||| || ||| || ||||| Sbjct 29249 GGGTCCTTGCCCAGGTTGCCGATGAGGATGACCTTGTT 29212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139280206281720