Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq547 114 2e-20 seq29 114 2e-20 seq11 109 9e-19 seq9 84.2 3e-11 >seq547 Length=3469 Score = 114 bits (126), Expect = 2e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || ||||| ||||| ||||| ||| |||| || |||| | || Sbjct 1592 TGCAGATTTTTGTTAAGACTTTAACTGGAAAGACAATCACTCTTGAGGTTGAACCTTCCG 1533 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | || || || || || ||| ||| ||||| || || || || |||| Sbjct 1532 ATACTATTGACAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATCCCTCCAGACCAAC 1473 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || |||||||| || || ||| | || ||| ||||| | | |||||||||| Sbjct 1472 AACGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAATA 1413 Query 146212 TACAAAAAGAATCGAC 146227 | ||||||||||| || Sbjct 1412 TTCAAAAAGAATCAAC 1397 Score = 109 bits (120), Expect = 9e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || ||||| ||||||||||||||| |||| || |||| | Sbjct 1820 TGCAAATTTTTGTTAAGACTTTAACTGGAAAAACAATTACTCTTGAAGTTGAACCATCTG 1761 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| | || || ||| || || ||| |||||||| || ||||| ||||||| Sbjct 1760 ACACTATCGACAACGTCAAATCCAAGATTCAAGACAAAGAAGGAATCCCACCAGATCAAC 1701 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || || ||||| || |||||| | || ||| ||||| | | || || || | Sbjct 1700 AACGTCTTATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAACA 1641 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | ||||| || || ||| ||||| Sbjct 1640 TCCAAAAGGAGTCAACTCTCCAT 1618 >seq29 Length=268433 Score = 114 bits (126), Expect = 2e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || ||||| ||||| ||||| ||| |||| || |||| | || Sbjct 198541 TGCAGATTTTTGTTAAGACTTTAACTGGAAAGACAATCACTCTTGAGGTTGAACCTTCCG 198482 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | || || || || || ||| ||| ||||| || || || || |||| Sbjct 198481 ATACTATTGACAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATCCCTCCAGACCAAC 198422 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || |||||||| || || ||| | || ||| ||||| | | |||||||||| Sbjct 198421 AACGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAATA 198362 Query 146212 TACAAAAAGAATCGAC 146227 | ||||||||||| || Sbjct 198361 TTCAAAAAGAATCAAC 198346 >seq11 Length=1024817 Score = 109 bits (120), Expect = 9e-19 Identities = 281/417 (67%), Gaps = 26/417 (6%) Strand=Plus/Plus Query 23849 TCAATTACATCCCATAATTCATTTCT-AGTTATTGGATCTATACCATTTGTTGGTTCATC 23907 ||||| |||| ||||| | || | | | || ||||||| || ||| ||| |||||||| Sbjct 545420 TCAATAACATTCCATA-TGAATGTTTGACTTTTTGGATCCATCCCAGATGTAGGTTCATC 545478 Query 23908 TAATAAAACACAATTTGGATATCCTATTAATGATAAACATGTAGATAATTTTCGTTTATT 23967 | | | | |||||||| |||||||| | | || ||| |||||||||| |||||| Sbjct 545479 AAGATATATAATATTTGGATTTCCTATTATAGCAATACCTGTTGATAATTTTCTTTTATT 545538 Query 23968 TCCACCACTATAAGTTCCGCATATTTGATTTG-CA--ATATTACATAAATCAAATTTTAT 24024 ||||||||| ||||| | | | ||||| || || || | | ||| | |||| | Sbjct 545539 ACCACCACTA--AGTTCTG--TTGTCAATTTGTCAGCATGTTCCGTTAATGACATTTGTT 545594 Query 24025 -TAATAATTTATTTACTACATGATTTATAT------TTGTTATACCACGTAATTTTCCAT 24077 ||||| ||| || ||| || ||||| ||| || || | |||| ||||| Sbjct 545595 CTAATATCCAATTAACAACAATATCTATATCCTTTTTTGAGATTCCTCTTAATAATCCAT 545654 Query 24078 ATAAATATAATAACTCTTTTCCTGTAA-ATTCATCTATTAATGAATCTTGTTGAGGACAA 24136 | | | || | | ||| ||||| |||||| | ||||||||| ||| |||||| Sbjct 545655 ACATTTTTATTTGATTTTTAGGTGTAATATTCATAT-TTAATGAATGAATTTGTGGACAA 545713 Query 24137 TATCCAATAGTTCCATTTATTTTTATTTTCCCTA----TTGTTGGTTCAATTTCATTTGT 24192 |||||| || ||| | |||| | | || | || |||| ||| ||||| Sbjct 545714 TATCCATATGTACCAAATGCTTTTGTAATACCAAAATCTTCTTGG----ATTGTTTTTGT 545769 Query 24193 CATCATTTTAAACATTGTCGTTTTTCCAGCACCATTAGTTCCTAATAATCCAAAGCA 24249 | ||| ||| |||| | ||| ||||||||||| ||||| | ||||| ||||| Sbjct 545770 TAATATTGAAAATGTTGTTGATTTACCAGCACCATTTGTTCCAAGAAATCCTAAGCA 545826 >seq9 Length=1040044 Score = 84.2 bits (92), Expect = 3e-11 Identities = 209/308 (68%), Gaps = 22/308 (7%) Strand=Plus/Plus Query 23858 TCCCATA--ATTCATTTCTAGTTATTGGATCTATACCATTTGTTGGTTCATCTAATAAAA 23915 ||||||| |||| |||| | | ||||||| | |||| ||| |||||||||||||| | Sbjct 46420 TCCCATATTATTC--TTCTTGCTTTTGGATCAACACCAGATGTAGGTTCATCTAATAACA 46477 Query 23916 CACAATTTGGATATCCTATTAATGATAAACATGTAGATAATTTTCGTTTATTTCCACCAC 23975 | || ||| || | ||| | | || | |||||| ||| |||||| |||||| Sbjct 46478 AAACATCTGGCATCCCAACTAAAGCAATACCTAATGATAATCTTCTTTTATTACCACCAG 46537 Query 23976 TATAAGTTCCGCATATTTGATTTGCAATATTACATA--AAT-CAAATTTTATTAATAATT 24032 ||| ||| |||||| || | | |||||| ||| | |||| | ||||||| Sbjct 46538 AATATGTT---TTTATTTGTCTTTTAGCA-TACATACCAATACCAATTGCTTCAATAATT 46593 Query 24033 -TATTTACTACATGATT----TATATTTGT----TATACCACGTAATTTTCCATATAAAT 24083 |||| ||| | ||| ||| ||| | ||||||||| | | || | | | || Sbjct 46594 GTATTAACT--GTTATTGGAATATCTTTATCAACTATACCACGAATTCTTGAAAACATAT 46651 Query 24084 ATAATAACTCTTTTCCTGTAAATTCATCTATTAATGAATCTTGTTGAGGACAATATCCAA 24143 |||| |||| ||| || | ||| | ||||| | ||| | |||||||||||| |||| Sbjct 46652 ATAAAGTTTCTTCTCCCGTCATTTCTTTTATTATAGCATCGTATTGAGGACAATAACCAA 46711 Query 24144 TAGTTCCA 24151 || || || Sbjct 46712 TACTTTCA 46719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786148612985200