Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq547 141 7e-29 seq29 141 7e-29 seq82 82.4 6e-11 >seq547 Length=3469 Score = 141 bits (156), Expect = 7e-29 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || |||||||||||||| |||||||| | || || | Sbjct 1378 ACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAAAGAGTTCTTCC 1437 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| || |||||| | || | | ||| || || || || ||||| || || Sbjct 1438 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGGATACCTTCCTT 1497 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| ||| |||| ||||| | || | ||| || ||| |||| || |||||||| | Sbjct 1498 ATCTTG-AATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACCTCAAGAGTGA 1556 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || |||||||| || |||||||| |||||||| Sbjct 1557 TTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCAT 1593 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || || | ||| || || || || ||||| ||||| || || | Sbjct 1595 CCTCCACGAAGACGGAGAACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCAGAG 1654 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || |||||||| || ||| | || | | ||| ||||| || || Sbjct 1655 AGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATAAGACGTTGTTGATCTGGTGGG 1714 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||||||||| ||| || | |||||| | || | ||||||||| |||| || Sbjct 1715 ATTCCTTCTTTGTCTTG-AATCTTGGATTTGACGTTGTCGATAGTGTCAGATGGTTCAAC 1773 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||||||| || ||||| |||||||| || |||||||| || |||||| Sbjct 1774 TTCAAGAGTAATTGTTTTTCCAGTTAAAGTCTTAACAAAAATTTGCATT 1822 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 29702 TTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCA 29760 |||| ||||||| | || | |||||||| |||| ||||||||||| || || || ||| Sbjct 1893 TTTGATTTGACATTGTCAATTGTGTCAGATGGTTCAACTTCAAGAGTGATTGTCTTTCCA 1952 Query 29761 GTTAAGGTTTTAACAAATATCTGCATT 29787 |||||||| |||||||| || |||||| Sbjct 1953 GTTAAGGTCTTAACAAAGATTTGCATT 1979 >seq29 Length=268433 Score = 141 bits (156), Expect = 7e-29 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || |||||||||||||| |||||||| | || || | Sbjct 198327 ACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAAAGAGTTCTTCC 198386 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| || |||||| | || | | ||| || || || || ||||| || || Sbjct 198387 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGGATACCTTCCTT 198446 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| ||| |||| ||||| | || | ||| || ||| |||| || |||||||| | Sbjct 198447 ATCTTG-AATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACCTCAAGAGTGA 198505 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || |||||||| || |||||||| |||||||| Sbjct 198506 TTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCAT 198542 >seq82 Length=59906 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 |||||| | || | | ||| || || || ||||| || || || ||||| | ||| Sbjct 47880 CCAGCAAAGATGAGGCGTTGTTGGTCAGGAGGAATTCCTTCCTTCTCTTGGATTTTAGAC 47821 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 |||||| | || | ||| || || | || ||||||||||| |||||||||||||| | Sbjct 47820 TTGACATTATCAATAGTATCGGATGGCTCAACTTCAAGAGTGATAGTTTTGCCAGTAAGA 47761 Query 29767 GTTTTAACAAATATCTGCAT 29786 ||||| || || || ||||| Sbjct 47760 GTTTTGACGAAGATTTGCAT 47741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385210702305210