Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq24 163 4e-35 seq5 116 5e-21 seq40 113 6e-20 seq6 100 4e-16 >seq24 Length=311514 Score = 163 bits (180), Expect = 4e-35 Identities = 407/607 (67%), Gaps = 11/607 (2%) Strand=Plus/Plus Query 168519 ATTCTTAAAGAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGAT 168578 ||| || ||||| | || ||| |||| ||| ||| || | || || | ||| Sbjct 228424 ATTGTTGAAGAATTGTTGTGGTTTATTTCTGGTAGTACTAATGCGAAGGTTTTGACTGAA 228483 Query 168579 ATAGGTGTTAAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTT 168638 | ||||| || ||||| | ||||||| | | |||| || ||| ||| ||| Sbjct 228484 AAGGGTGTCAAGATTTGGGAACCTAATGGTAGTAGACAATTCTTGGATAATCTTGGATTT 228543 Query 168639 ACCGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGA 168698 || ||| || ||| || |||||||||||| |||| |||||||||||||||||| ||| Sbjct 228544 ACAGAACGACCAGAGGGAGATTTAGGTCCAGTTTACGGATTTCAATGGAGACATTTTGGA 228603 Query 168699 GCTCAATAT-ATTGACTGTGATACAGATTACACCGGACAAGGAGTAGACCAATTAAGTCA 168757 ||| ||||| | || | |||| | |||||||| ||| | ||||| || ||||| ||| Sbjct 228604 GCTAAATATGAAGGAGT-TGATGCCGATTACACAGGAAAGGGAGTTGATCAATTGGCTCA 228662 Query 168758 AACTATAAAT-ACTTTACACAACAATCCGGAAAATAGAAGAATATTAATTAATAG-TTGG 168815 | | || | ||| | || || || || | |||||||| | ||| || ||| Sbjct 228663 GGTTGTTGATCAAATTA-AAAATAACCCAGATTCTCGAAGAATAAT-CTTATCAGCATGG 228720 Query 168816 GATGTACCACAACTTGATAAAATGGTTCTTCCCCCTTGTCACACTTTAGTGCAATTTTAT 168875 || | | |||||| ||||||||| || || || || ||||| || ||||||||| Sbjct 228721 AATCCTTCTGATCTTGATTTAATGGTTCTCCCTCCATGCCATACTTTGGTTCAATTTTAT 228780 Query 168876 GTAAGGAAAAAATCAATCTTAGATTGTCAGTTGTATCAAAGATCAGCTGATTTAGGATTA 168935 || || | | ||| ||||| ||||||||| | | ||| ||||| | Sbjct 228781 GT---TCAAGATGGAGAGTTAAGCTGTCAATTGTATCAACGCAGTGGAGATGTAGGACTT 228837 Query 168936 GGAGTACCTTATAATATTGGATTTTATTCATTTTTAACACTTGTGCTAAGTAAATGGTGT 168995 ||||| |||| ||||||| | ||| || || | || | | ||||| ||| ||| Sbjct 228838 GGAGTTCCTTTCAATATTGCTTCTTACTCTCTTCTGACTCATATGCTAGCAAAAATATGT 228897 Query 168996 -AATTTGACGCCTGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAACCA 169054 ||| || | | || | ||| |||| ||| ||||||||| |||| | || || || Sbjct 228898 GGATTGGAAG-CAGGTGATTTTGTTCACACTATTGGAGATGCTCACATTTACAGCAATCA 228956 Query 169055 TGTTGAACCTTTAAAGGTTCAATTGAAAAGAAAACCATATTCTTTTCCAAATGTTAAATT 169114 ||||||| || ||||| ||||| | |||||||| | ||||||| | ||||| Sbjct 228957 TGTTGAAGCTCTAAAGACACAATTAGTTCGTGAACCATATCCATTTCCAACAATCAAATT 229016 Query 169115 TATAGGT 169121 | | ||| Sbjct 229017 TGTTGGT 229023 >seq5 Length=1449561 Score = 116 bits (128), Expect = 5e-21 Identities = 175/243 (72%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 193803 GGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCATGCTAGAAGT 193862 || |||| ||||||||| |||||||||||||| ||||||||||||||||||| | Sbjct 1297264 GGACCAATTTATTATCAAAAACTTAAACATATGGTATTGGATAAAATGCATGCTAGA--T 1297207 Query 193863 CA--TGGACAAGTGACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAG 193920 || || | || || |||| || ||||| | | ||| | | | | ||| | Sbjct 1297206 CAAGAGGTCCTGTTGCTGTTTTAACACGTCAACCTACTGAAGGTAGAGCACGTGATGGTG 1297147 Query 193921 GTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTGCTACTCAATTC- 193979 |||||||||| ||||||||||| | ||| ||| || ||| | |||| || ||||| | Sbjct 1297146 GTTTAAGATTAGGAGAAATGGAAAGAGATTGTCTTATAGCTTATGGAGC--ATCAATGCT 1297089 Query 193980 TTGAAT-GAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTGCACAGAATG 194038 || ||| || ||| | | | | |||||||| |||||||| |||||||| ||| ||| Sbjct 1297088 TTTAATGGAGAGATTAATGGTATCTTCTGATCAATTTCAAGTTGATGTTTGTTCAGTATG 1297029 Query 194039 TGG 194041 ||| Sbjct 1297028 TGG 1297026 Score = 98.7 bits (108), Expect = 1e-15 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 193444 TACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGGTATG 193502 |||| |||| || ||||||||| ||| || |||| | |||| | | | || |||||| Sbjct 1209458 TACCACAAATTGGAGATAAATTTGCTTCTAGACATGGTCAAAAAGGTACCATG-GGTATG 1209516 Query 193503 ATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTATT 193562 || ||| ||||||||||||||||||||| |||| | |||||||||||||||| Sbjct 1209517 ATGTATCGCCAAGAAGATATGCCATTTACAAAAGAAGGTTTATCACCAGATATTATTATT 1209576 Query 193563 AATCCAAATTGTATTCCATCCAGAATGACCATT 193595 ||||| || | | ||||| ||||||| ||| Sbjct 1209577 AATCCTCATGCTGTACCATCTCGAATGACAATT 1209609 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 163043 TATAAACACGGTGAACAAAATTTATGTGAA-ACTATAATTAAGTTTGCCCAAGATTTTGT 163101 ||| | || ||||||||| |||| ||| || || || || || || ||||||| ||| Sbjct 711764 TATCATCATGGTGAACAATCTTTAA-TGATGACAATTATCAATTTGGCACAAGATTATGT 711706 Query 163102 TGGTACAAATAATATAGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGG 163161 ||| | |||||||| |||||| |||| ||||||||| ||||| ||| | |||| Sbjct 711705 TGGATCTAATAATATTAACTTACTTTTACCTATTGGTCAATTCGGTACTAGACTTCAAGG 711646 Query 163162 AGGTAAAGATTCTGC 163176 ||| ||||||||||| Sbjct 711645 AGGAAAAGATTCTGC 711631 >seq40 Length=203417 Score = 113 bits (124), Expect = 6e-20 Identities = 147/200 (74%), Gaps = 15/200 (8%) Strand=Plus/Plus Query 51868 TGGATGGTGATGA---TGTACTATTAAATAGGCAACCAACACTTCATAAAGCTTCTATGC 51924 |||||| |||||| |||||| || ||| | || ||| | ||||| ||| |||||| Sbjct 141243 TGGATGATGATGACATTGTACTTTTTAATCGTCAGCCATCTCTTCACAAAATTTCTAT-- 141300 Query 51925 AAAGTTTTAAAGTTAAAA--TTCAACCAGTAAAAACATTTAA----AATGAATTTGGCTA 51978 || || | | || ||| || ||| | || ||||||| ||||||| || || Sbjct 141301 AATGTCTCACAGAGCAAAAGTTGTACCGGGAAGAACATTTCGTTTCAATGAATGTGCCTG 141360 Query 51979 TGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAAT 52038 | | | |||||||||||||||||||||| |||||||||||||||||| | || ||| Sbjct 141361 T----ACACCATATAATGCTGATTTTGATGGAGATGAAATGAATTTACATTTACCACAAA 141416 Query 52039 CATATGGAGCTACTGCTGAA 52058 |||||| ||||| |||||| Sbjct 141417 CATATGAAGCTAAAGCTGAA 141436 >seq6 Length=1300811 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 51852 GTTAAAAGACAATTGATGGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCAT 51911 ||| ||||||| ||| ||||||||| | | | || ||| | |||||||||||||| Sbjct 1075337 GTTGAAAGACATATGACTGATGGTGATATTATTGTTTTCAATCGTCAACCAACACTTCAC 1075396 Query 51912 AAAGCTTCTATGCAAAGTTTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAAT 51971 ||| |||| || | ||||||| | ||| |||||| | ||||||| Sbjct 1075397 AAAATGAGTATGATGGGTCACAGAGTTAAAGTATTACCTTGGTCAACATTCAGAATGAAT 1075456 Query 51972 TTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTT 52031 | || | || | | |||||||||||||||||||||| |||||||||||| | ||| | Sbjct 1075457 CTTTCTGTAACAACACCATATAATGCTGATTTTGATGGTGATGAAATGAATCTCCATTTA 1075516 Query 52032 CCTCAATCAT 52041 ||||| |||| Sbjct 1075517 CCTCAGTCAT 1075526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635163229106800