Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq24 113 6e-20 seq5 105 9e-18 >seq24 Length=311514 Score = 113 bits (124), Expect = 6e-20 Identities = 313/473 (66%), Gaps = 13/473 (3%) Strand=Plus/Plus Query 180390 TTACAACaaaaaaaaTAGTTTATAAAAATATTCTTAAAGAATTATTATGGATAATGAAAG 180449 |||||||||| | || | ||| ||| ||| || ||||||| || ||| | || | Sbjct 228395 TTACAACAAAGAGAACATTTTGGAAAGGGATTGTTGAAGAATTGTTGTGGTTTATTTCTG 228454 Query 180450 GTTTAACAAATTCTAATTTGTTAAATGATATTGGTGTTAAAGTGTGGAATGATAATGGTT 180509 || || ||| | || | || | ||| | ||||| || | ||| | ||||||| Sbjct 228455 GTAGTACTAATGCGAAGGTTTTGACTGAAAAGGGTGTCAAGATTTGGGAACCTAATGGTA 228514 Query 180510 CGCGTAAGTTTTTAGATTCTTGTGGATTTCATTTTCGAAAAGAAGGTGATTTAGGACCAA 180569 | | || || ||| | ||||||| ||| ||| || |||||||| ||| Sbjct 228515 GTAGACAATTCTTGGATAATCTTGGATTTACAGAACGACCAGAGGGAGATTTAGGTCCAG 228574 Query 180570 TTTATGGATTTCAATGGAGACATGCAGGAGCTCAATAT-ATTGACTGTGATACCAACTAT 180628 |||| |||||||||||||||||| |||||| ||||| | || | |||| || | || Sbjct 228575 TTTACGGATTTCAATGGAGACATTTTGGAGCTAAATATGAAGGAGT-TGATGCCGATTAC 228633 Query 180629 ATCGGGCAAGGTA-TAGACCAATTAAGCCAAGTTATAGAAACTATAAAAAATAATCCCGA 180687 | | || |||| | | || ||||| || ||| | || || |||||||| || || Sbjct 228634 A-CAGGAAAGGGAGTTGATCAATTGGCTCAGGTTGTTGATCAAATTAAAAATAACCCAGA 228692 Query 180688 ATGCCGAAGAATAATCATAGATAGTTGGAATGTATCACAATTACCAGAT---ATGGCTCT 180744 | |||||||||||| || |||||| || | | ||| |||| ||| Sbjct 228693 TTCTCGAAGAATAATCTTATCAGCATGGAATCCTTCTGA---TCTTGATTTAATGGTTCT 228749 Query 180745 TCCACCATGTCACTGTTTGGTACAATTTTATGTTAGAAATAAAATTTATTTAGATTGCCA 180804 || ||||| || |||||| |||||||||||| | || | | ||| || || Sbjct 228750 CCCTCCATGCCATACTTTGGTTCAATTTTATGTTCAAGATGGA---GAGTTAAGCTGTCA 228806 Query 180805 ATTGTATCAAAGATCTGCAGATTTAGGATTAGGTGTACCATATAATATTGCTT 180857 |||||||||| | || |||| ||||| | || || || | |||||||||| Sbjct 228807 ATTGTATCAACGCAGTGGAGATGTAGGACTTGGAGTTCCTTTCAATATTGCTT 228859 >seq5 Length=1449561 Score = 105 bits (116), Expect = 9e-18 Identities = 116/152 (76%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 201571 TACCAGAAATTGGAGATAAATTTTGTTCTGGA-ATGGCCCAAAAAGGAACTTGTGGTATG 201629 ||||| ||||||||||||||||| |||| || |||| |||||||| || |||||| Sbjct 1209458 TACCACAAATTGGAGATAAATTTGCTTCTAGACATGG-TCAAAAAGGTACCATGGGTATG 1209516 Query 201630 ATTTATGCACAAGAAGATATGCCGTTTACACAATCGGGTATGACCCCGGATATTATAATC 201689 || ||| |||||||||||||| |||||| || ||| | | || |||||||| || Sbjct 1209517 ATGTATCGCCAAGAAGATATGCCATTTACAAAAGAAGGTTTATCACCAGATATTATTATT 1209576 Query 201690 AATCCAAATTGTATACCATCAAGAATGACCAT 201721 ||||| || | ||||||| ||||||| || Sbjct 1209577 AATCCTCATGCTGTACCATCTCGAATGACAAT 1209608 Score = 104 bits (114), Expect = 3e-17 Identities = 124/165 (75%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 201079 ATTATCCTCAAAAACCACTTGTTACAACTGACATTGCA-GAATTTAATG-GTCTAAATGA 201136 ||||||| ||||||||| | |||||||| || || | | ||| || | | ||||| Sbjct 1208930 ATTATCCACAAAAACCATTAGTTACAAC--ACGTTCGATGTCTTTTTTGAGATTTAATGA 1208987 Query 201137 ATACCCCAATGGTATTAATGCAATTGTAGCAATTGCATGTTACACTGGATACAATCAAGA 201196 || || |||||||||||||||||| |||||| || ||| ||||||| |||||||| Sbjct 1208988 ATTACCTGCTGGTATTAATGCAATTGTTGCAATTTTATCTTATTCTGGATATAATCAAGA 1209047 Query 201197 AGATAGTGTTATTCTTAATAAAGCATCTATTGAAAGAGGTTTATT 201241 |||| ||||||| | ||| || || ||||| | |||||||| Sbjct 1209048 AGATTCTGTTATTATGAATCAATCAGGAATTGATCGTGGTTTATT 1209092 Score = 91.5 bits (100), Expect = 2e-13 Identities = 168/242 (69%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 201930 GGCCCAACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCATGCGAGAAGT 201989 || |||| || ||||| |||||||||||||| ||||||||||||||| ||| | Sbjct 1297264 GGACCAATTTATTATCAAAAACTTAAACATATGGTATTGGATAAAATGCATGCTAGA--T 1297207 Query 201990 CATG--GTCAAGTAACAACATTACATCGTCAACCAAACTGT-GGTCGGTCCCAAGGTGGT 202046 || | ||| || | ||| |||||||| | ||| ||| | | | | |||| Sbjct 1297206 CAAGAGGTCCTGTTGCTGTTTTAACACGTCAACCTA-CTGAAGGTAGAGCACGTGATGGT 1297148 Query 202047 GGATTAAGATTTGGAGAAATGGAAAAAGATTGTATTTTGGTTCATGGGGCCACACAATTT 202106 || |||||||| ||||||||||||| ||||||| || | | | |||| || || || Sbjct 1297147 GGTTTAAGATTAGGAGAAATGGAAAGAGATTGTCTTATAGCTTATGGAGCATCAATGCTT 1297088 Query 202107 TTAAATGAAAGAATGTTTTTGTATTCAGATCCTTTTCAAATCGATGTGTGTACAAATTGT 202166 |||| || ||| | | | | ||| |||| |||||| | ||||| ||| || ||| Sbjct 1297087 TTAATGGAGAGATTAATGGTATCTTCTGATCAATTTCAAGTTGATGTTTGTTCAGTATGT 1297028 Query 202167 GG 202168 || Sbjct 1297027 GG 1297026 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 172926 CTGATTATAAACATGGTGAACAAAACCTTTGTGAA-ACTATAATAAAATTTGCACAGGAT 172984 ||| |||| | |||||||||||| | || ||| || || || || || ||||| ||| Sbjct 711769 CTGCTTATCATCATGGTGAACAAT-CTTTAATGATGACAATTATCAATTTGGCACAAGAT 711711 Query 172985 TTTGTAGGTACAAATAACATAACATTACTTGAACCAGATGGTCAGTTTGGTACTAGACTT 173044 | ||| || | ||||| || | |||||| ||| |||||| || |||||||||||| Sbjct 711710 TATGTTGGATCTAATAATATTAACTTACTTTTACCTATTGGTCAATTCGGTACTAGACTT 711651 Query 173045 GAAGGAGGTAAAGATTCAGC 173064 ||||||| |||||||| || Sbjct 711650 CAAGGAGGAAAAGATTCTGC 711631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655265174290000