Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq24 159 4e-34 seq40 109 7e-19 seq5 107 2e-18 seq6 100 4e-16 >seq24 Length=311514 Score = 159 bits (176), Expect = 4e-34 Identities = 403/600 (67%), Gaps = 17/600 (3%) Strand=Plus/Plus Query 171608 TTAAAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAG 171667 || ||||| | || ||| ||||| ||| ||| || | || || | ||| | | Sbjct 228428 TTGAAGAATTGTTGTGGTTTATTTCTGGTAGTACTAATGCGAAGGTTTTGACTGAAAAGG 228487 Query 171668 GTGTTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTG 171727 |||| || ||||| | ||||||| | | |||| || ||| || ||||| | Sbjct 228488 GTGTCAAGATTTGGGAACCTAATGGTAGTAGACAATTCTTGGATAATCTTGGATTTACAG 228547 Query 171728 AAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTC 171787 || || ||| || |||||||||||| |||| |||||||||||||||||| || ||| Sbjct 228548 AACGACCAGAGGGAGATTTAGGTCCAGTTTACGGATTTCAATGGAGACATTTTGGAGCTA 228607 Query 171788 AATAT-ATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACT 171846 ||||| | || | | || | |||||||||||| | ||||| || ||||| ||| | Sbjct 228608 AATATGAAGGAGT-TGATGCCGATTACACAGGAAAGGGAGTTGATCAATTGGCTCAGGTT 228666 Query 171847 ATTAAT-ACTTTACAAAACAACCCAGAAAGTAGAAGGATGTTAAT-TGAT-AG-TTGGAA 171902 || || | ||| |||| |||||||| | |||| | |||| | || || ||||| Sbjct 228667 GTTGATCAAATTA-AAAATAACCCAGATTCTCGAAGAA---TAATCTTATCAGCATGGAA 228722 Query 171903 TGTACCTCAACTTGATAAAATGGTTCTTCCTCCTTGCCACACTTTAGCACAATTTTATGT 171962 | || | |||||| ||||||||| ||||| ||||| ||||| | ||||||||||| Sbjct 228723 TCCTTCTGATCTTGATTTAATGGTTCTCCCTCCATGCCATACTTTGGTTCAATTTTATGT 228782 Query 171963 CAGaaaaaaaTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGG 172022 || | | ||| ||||| || |||||| | | ||| ||||| | || Sbjct 228783 ---TCAAGATGGAGAGTTAAGCTGTCAATTGTATCAACGCAGTGGAGATGTAGGACTTGG 228839 Query 172023 GGTACCTTATAATATTGGATTTTATTCATTTTTAATACTTGTGTTA--AGTAAATGGTGC 172080 || |||| ||||||| | ||| || || | | | | || || | || ||| Sbjct 228840 AGTTCCTTTCAATATTGCTTCTTACTCTCTTCTGACTCATATGCTAGCAAAAATATGTGG 228899 Query 172081 AATTTAACTCCAGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAATCAT 172140 | | || |||| | ||| |||| ||| ||||||||| |||| | || |||||| Sbjct 228900 ATTGGAA--GCAGGTGATTTTGTTCACACTATTGGAGATGCTCACATTTACAGCAATCAT 228957 Query 172141 GTTGAACCTTTAAAGGTTCAATTAAAAAGAAAACCATATACTTTTCCAAATGTTAAATTT 172200 |||||| || ||||| |||||| | |||||||| | ||||||| | |||||| Sbjct 228958 GTTGAAGCTCTAAAGACACAATTAGTTCGTGAACCATATCCATTTCCAACAATCAAATTT 229017 >seq40 Length=203417 Score = 109 bits (120), Expect = 7e-19 Identities = 156/216 (72%), Gaps = 18/216 (8%) Strand=Plus/Plus Query 50302 GTTAAAAGACAATTGATAGATGGTGATGA---TGTACTATTAAATAGGCAACCAACACTT 50358 ||| ||||||| || |||| |||||| |||||| || ||| | || ||| | ||| Sbjct 141230 GTTGAAAGACATCTG---GATGATGATGACATTGTACTTTTTAATCGTCAGCCATCTCTT 141286 Query 50359 CATAAAGCTTCTATGCAAAGTTTTAAAGTTAAAA--TTCAACCAGTAAAAACATTTAA-- 50414 || ||| |||||| || || | | || ||| || ||| | || ||||||| Sbjct 141287 CACAAAATTTCTAT--AATGTCTCACAGAGCAAAAGTTGTACCGGGAAGAACATTTCGTT 141344 Query 50415 --AATGAATTTAGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAAT 50472 ||||||| | || | | | |||||||||||||||||||||| |||||||||||| Sbjct 141345 TCAATGAATGTGCCTGT----ACACCATATAATGCTGATTTTGATGGAGATGAAATGAAT 141400 Query 50473 TTACATGTTCCTCAATCATATGGAGCTACTGCTGAA 50508 |||||| | || ||| |||||| ||||| |||||| Sbjct 141401 TTACATTTACCACAAACATATGAAGCTAAAGCTGAA 141436 >seq5 Length=1449561 Score = 107 bits (118), Expect = 2e-18 Identities = 172/243 (71%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 193356 GGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATGCATGCTAGAAGT 193415 || |||| |||||| || |||||||| ||||| ||||||||||||||||||| | Sbjct 1297264 GGACCAATTTATTATCAAAAACTTAAACATATGGTATTGGATAAAATGCATGCTAGA--T 1297207 Query 193416 CA--TGGGCAAGTGACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAG 193473 || || | || || |||| || ||||| | | ||| | | | | ||| | Sbjct 1297206 CAAGAGGTCCTGTTGCTGTTTTAACACGTCAACCTACTGAAGGTAGAGCACGTGATGGTG 1297147 Query 193474 GTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGCTACTCAAT--T 193531 |||||||||| ||||||||||||| ||| ||| || ||| |||| || ||||| | Sbjct 1297146 GTTTAAGATTAGGAGAAATGGAAAGAGATTGTCTTATAGCTTATGGAGC--ATCAATGCT 1297089 Query 193532 CTTAAATGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTGCACAGAATG 193591 |||| || ||| | | | | |||||||| |||||||| |||||||| ||| ||| Sbjct 1297088 TTTAATGGAGAGATTAATGGTATCTTCTGATCAATTTCAAGTTGATGTTTGTTCAGTATG 1297029 Query 193592 TGG 193594 ||| Sbjct 1297028 TGG 1297026 Score = 98.7 bits (108), Expect = 1e-15 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 192997 TACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGGAACTTGTGGTATG 193055 |||| |||| || ||||||||| ||| || |||| | |||| | | | || |||||| Sbjct 1209458 TACCACAAATTGGAGATAAATTTGCTTCTAGACATGGTCAAAAAGGTACCATG-GGTATG 1209516 Query 193056 ATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTATT 193115 || ||| |||||||||||||||||||||| |||| | |||||||||||||||| Sbjct 1209517 ATGTATCGCCAAGAAGATATGCCATTTACAAAAGAAGGTTTATCACCAGATATTATTATT 1209576 Query 193116 AATCCAAATTGTATTCCGTCCAGAATGACCATT 193148 ||||| || | | || || ||||||| ||| Sbjct 1209577 AATCCTCATGCTGTACCATCTCGAATGACAATT 1209609 Score = 95.1 bits (104), Expect = 2e-14 Identities = 104/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 165204 TTATAAACATGGTGAACAAAATTTATGTGAA-ACTATAATTAAGTTTGCCCAAGATTTTG 165262 |||| | |||||||||||| |||| ||| || || || || || || ||||||| || Sbjct 711765 TTATCATCATGGTGAACAATCTTTAA-TGATGACAATTATCAATTTGGCACAAGATTATG 711707 Query 165263 TTGGTACAAATAATATAGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAG 165322 |||| | |||||||| |||||| |||| ||||||||| ||||| ||| | ||| Sbjct 711706 TTGGATCTAATAATATTAACTTACTTTTACCTATTGGTCAATTCGGTACTAGACTTCAAG 711647 Query 165323 GAGGTAAAGATTCTGC 165338 |||| ||||||||||| Sbjct 711646 GAGGAAAAGATTCTGC 711631 >seq6 Length=1300811 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 50302 GTTAAAAGACAATTGATAGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCAT 50361 ||| ||||||| ||| ||||||||| | | | || ||| | |||||||||||||| Sbjct 1075337 GTTGAAAGACATATGACTGATGGTGATATTATTGTTTTCAATCGTCAACCAACACTTCAC 1075396 Query 50362 AAAGCTTCTATGCAAAGTTTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAAT 50421 ||| |||| || | ||||||| | ||| |||||| | ||||||| Sbjct 1075397 AAAATGAGTATGATGGGTCACAGAGTTAAAGTATTACCTTGGTCAACATTCAGAATGAAT 1075456 Query 50422 TTAGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTT 50481 | || | || | | |||||||||||||||||||||| |||||||||||| | ||| | Sbjct 1075457 CTTTCTGTAACAACACCATATAATGCTGATTTTGATGGTGATGAAATGAATCTCCATTTA 1075516 Query 50482 CCTCAATCAT 50491 ||||| |||| Sbjct 1075517 CCTCAGTCAT 1075526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628516979481600