Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq5 113 4e-20 seq547 104 2e-17 seq29 87.8 2e-12 >seq5 Length=1449561 Score = 113 bits (124), Expect = 4e-20 Identities = 626/983 (64%), Gaps = 74/983 (8%) Strand=Plus/Minus Query 150720 GGTTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTACTGTGAA--- 150776 |||| || |||||||| || || ||||| || ||||||| | ||||||| |||| Sbjct 1213430 GGTTTACCACTTGAAAATCTCCAGACAATACCCGTCTCATATACAAATT----TGAAGTA 1213375 Query 150777 -ACGGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTAC 150835 | |||||||||||||| || || | ||||| || || | || || ||||| Sbjct 1213374 TAAGGTTCAAATGACTCATTATTACCAAAAATTTGAGCAGTTGATGCTGTTGGCATTGGA 1213315 Query 150836 GCCACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAG 150895 || || | ||||||||| | || || |||||| || ||| ||| || |||||| Sbjct 1213314 GCTACCAACAATGAATTTCTTATACCATATTTTCTAATTTTTTCTTTTAATAATGACCAA 1213255 Query 150896 TCCCATAACGAAGTCG--GTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCG 150953 |||||||| | | | ||| | ||||| ||||| ||||| || || || || Sbjct 1213254 TCCCATAAATTACTTGGAGTAAC--TTTCCATAAATCATATTGTAAAATGCC-ACG---- 1213202 Query 150954 CTTTGCTACCGGCAAACGTGCTATAAGGCTCACTAA----CAGAT------GCCAGTTCG 151003 | ||| | ||| | | ||||| ||| ||| || || || | ||| Sbjct 1213201 ---AGATACAAGAGAACCTTC-ATAAGTTTCA-TAAGGACCATATTCTTCAGCTAATTCA 1213147 Query 151004 TAACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACG 151063 | || || | ||| ||||||| | |||||| |||| ||| || || | | Sbjct 1213146 CATGAAGCTTCCAATGCACCATGATATATTGTTTCAAATATTTTTTTGTT---TAAATCT 1213090 Query 151064 GCAGCAT-CGCTCA--CGTACGG-TATGCGCAACATAACAAATGCATCGGCCAAACCTTG 151119 ||| | | | |||| || ||| | || | | ||| | ||| ||||| ||||| Sbjct 1213089 TTAGCTTGTGAAGAAGCGTAGGGATAT-CTTAAAAGTATAAAAGTATCTGCCAATCCTTG 1213031 Query 151120 AATGCCTATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTC----AATAG 151175 || || ||||| || |||||||| |||||| || | | |||||| ||| | Sbjct 1213030 AACACCAATGCCAATAGGACGATGTTTCATATTTGA---TATACGAGTTTCTTCTAAT-G 1212975 Query 151176 GGTAGAAATTGCGATCAATAATTTTATTCAAACTATTCACTACATGTTTGACCACAGTGT 151235 | || |||| ||| || || ||||||||| | || || | |||| | ||| Sbjct 1212974 GATAATAATTTATATCTATTATCTTATTCAAATTTTTTGTTAAAAGTTTAGTAATTTTGT 1212915 Query 151236 GCAATAGTTGAAAATCAA---AAGTA---------TCATTATTGATATATTTATTGACGG 151283 | | | ||| ||||| | ||||| || || | | | || |||| | | Sbjct 1212914 GAAGTTGTTTAAAATTGAATGAAGTAATCCCATCTTCTTTTTCAACAAATCTATTTAAAG 1212855 Query 151284 CAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCG 151343 |||| || | | |||||||| || |||| | | | ||||||| || ||||| | Sbjct 1212854 CAATAGATCCCAAGTTACATACAGCGATTTCATTTGAAGAAGAATATTGAACAATTTCTG 1212795 Query 151344 CACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAG 151403 ||| ||||| |||||||| | ||| ||||| ||||||| ||||| || || ||| Sbjct 1212794 TACATAAATTTGAACATTTTATGATTCCTAAATTATTTTGATTACTTTTACGATTACAAT 1212735 Query 151404 CGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTC-TATAATGTTT--- 151459 || || || | |||||| ||||| || ||||| |||| |||| ||| | ||| Sbjct 1212734 GATCTTTATAAACCATGTAAGGTGTTCCAGTTTCAATTTGACTTTCACATATTTTTTGCC 1212675 Query 151460 --CGCATTAATGTAACCGCGGGCATTTGCTCGCGAAACTGGCCTTTATCCTCATAATGTT 151517 ||||| || || | ||||| | | | | || || ||||| | Sbjct 1212674 AGAGCATTCGTG---CCTTG---ATTTGACTTCTATAACGTTTTTCATTTTCATATTTAA 1212621 Query 151518 TGTACCAGTATTCAAAGTCATCACCATACGTATCGTTGAGCTTAGGACACTCGTTAGGAC 151577 || | |||||| || || || | ||| | || ||||| |||| ||||| Sbjct 1212620 CATATAAAGTTTCAAATTCTTCTCCCCAACTATTATCAAGACCTGGACATTCGTGAGGAC 1212561 Query 151578 ACATTAATGACCATATACCGTTTTC-TTCAACGCGTTTCATAAATATATCCGGAACCCAT 151636 |||| |||||||| ||| | | |||||| ||||||||||||| ||| ||||||||| Sbjct 1212560 ACATCAATGACCA-ATAAGAATCCCTTTCAACACGTTTCATAAATAAATCAGGAACCCAT 1212502 Query 151637 AATGCGTTCATCAAATCACGCGC 151659 || | | | |||||||| || Sbjct 1212501 AAACCATAAAATAAATCACGAGC 1212479 >seq547 Length=3469 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | ||| | ||| | || || || ||||| |||||||| || Sbjct 1595 CCTCCACGAAGACGGAGAACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCAGAG 1654 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| |||||||| || ||| |||| |||||||| ||||| || || Sbjct 1655 AGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATAAGACGTTGTTGATCTGGTGGG 1714 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||| || ||| | | || | ||||| | ||||| ||| Sbjct 1715 ATTCCTTCTTTGTCTTGAATCTTGGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACT 1774 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | || || || || || || || || || |||||||| Sbjct 1775 TCAAGAGTAATTGTTTTTCCAGTTAAAGTCTTAACAAAAATTTGCAT 1821 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | ||| || |||| || ||||||||||| || || ||||| Sbjct 1367 CCACCACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAA 1426 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| ||||| || |||||| | || |||||||| || || ||||| Sbjct 1427 AGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGG 1486 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || ||| ||| || | | || | || || | ||||| || Sbjct 1487 ATACCTTCCTTATCTTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACC 1546 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 |||| ||| | ||||| || || || || || || || || |||||| || Sbjct 1547 TCAAGAGTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCATACCT 1597 >seq29 Length=268433 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | ||| || |||| || ||||||||||| || || ||||| Sbjct 198316 CCACCACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAA 198375 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| ||||| || |||||| | || |||||||| || || ||||| Sbjct 198376 AGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGG 198435 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || ||| ||| || | | || | || || | ||||| || Sbjct 198436 ATACCTTCCTTATCTTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACC 198495 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 |||| ||| | ||||| || || || || || || || || |||||| || Sbjct 198496 TCAAGAGTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCATACCT 198546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488532946692000