Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_024365.1 Length=51090 Score E Sequences producing significant alignments: (Bits) Value seq607 122 3e-23 >seq607 Length=3148 Score = 122 bits (134), Expect = 3e-23 Identities = 192/269 (71%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 34052 CGATCTGTTCCCGAAGTTCTGGAAGCTCTACCCGAACAAGAAGTGCAAGGCAGCTGCCGA 34111 ||| ||||| || |||||||||||| ||||| |||| |||||| ||||| Sbjct 583 CGAGCTGTTTTCGCGGTTCTGGAAGCTGTACCCCCGCAAGGTCGGCAAGGACAAAGCCGA 642 Query 34112 GAAGGCGTGGAAGAAACTCAAGGTCACTGACGACCTGTTCACCCTGATCGCCCAGGGGCT 34171 |||||| ||| ||| ||||| | || | || ||| | |||| | | ||| Sbjct 643 GAAGGCCTGGGCGAAGATCAAGCTGACCCAGCCACTATTCGACGAGATCATCGCTGCGCT 702 Query 34172 GGCCAGGCAATGCGCCTCACTGGCCTGGACCAAGGACGGTGGCCAGTTCATCCCGCACCC 34231 ||||| ||| | | | | | || |||||||||||| ||||||||||||||||| | Sbjct 703 GGCCAAGCACTCTGTCACCCCGGGGTGGACCAAGGACAACGGCCAGTTCATCCCGCATGC 762 Query 34232 GGCCACCTGGCTCAACGGCAAGCGCTGGGAGGACGAGGT-TCAG-CCTGTCAG-CAACGT 34288 | | || ||||||||||| ||||||||||||||||| || ||| | || | |||||| Sbjct 763 GTCGACTTGGCTCAACGGGAAGCGCTGGGAGGACGAAGTGCCAGAGGTCTCGGCCAACGT 822 Query 34289 GCACCAGTTCCCGCAGTCGCGCCACACCG 34317 |||||||| | |||| ||||| || || Sbjct 823 CCACCAGTTGC--CAGT-GCGCCGCAACG 848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163362888643440