Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq547 205 2e-47 seq29 205 2e-47 seq28 114 3e-20 seq82 98.7 2e-15 >seq547 Length=3469 Score = 205 bits (226), Expect = 2e-47 Identities = 175/216 (81%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| ||||| || || |||||||| || |||||||||||||| ||| |||| || Sbjct 1378 ACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAAAGAGTTCTTCC 1437 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| ||||| ||||||||||| || || | |||||| |||||||| || |||||||| Sbjct 1438 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGGATACCTTCCTT 1497 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||||||||||| || || || ||||| ||||| |||||| || || | ||| || Sbjct 1498 ATCTTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACCTCAAGAGTGAT 1557 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || || ||||| ||||| |||||||| Sbjct 1558 TGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCAT 1593 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| ||||| | || ||||| || || || || || || || |||| Sbjct 1593 TACCTCCACGAAGACGGAGAACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCAG 1652 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| |||| || ||||| ||||||||||| |||||||| || | |||||||||||| | Sbjct 1653 AGAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATAAGACGTTGTTGATCTGGTG 1712 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| || ||||||||||| | ||| || || || || || ||| ||||| | Sbjct 1713 GGATTCCTTCTTTGTCTTGAATCTTGGATTTGACGTTGTCGATAGTGTCAGATGGTTCAA 1772 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| | ||| || || || || || || ||||| ||||| || |||||| Sbjct 1773 CTTCAAGAGTAATTGTTTTTCCAGTTAAAGTCTTAACAAAAATTTGCATT 1822 Score = 132 bits (146), Expect = 9e-26 Identities = 120/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||||| ||||||||| ||||| || |||||||||||||| || ||||| || Sbjct 2115 CCTGCAAAGATTAATCTTTGTTGGTCTGGTGGAATTCCTTCCTTATCCTGGATCTTAGCC 2174 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || ||||| || || ||| || ||||| | ||||| ||||| |||||||| Sbjct 2175 TTGACGTTATCAATAGTGTCTGAAGGCTCAACTTCAAGCGTTATAGTCTTCCCTGTCAAA 2234 Query 82791 GTCTTTACAAATATCTGCATTATTATATTTT 82821 ||||| ||||| || ||||| ||| ||||| Sbjct 2235 GTCTTAACAAAGATTTGCATGGTTAAATTTT 2265 >seq29 Length=268433 Score = 205 bits (226), Expect = 2e-47 Identities = 175/216 (81%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| ||||| || || |||||||| || |||||||||||||| ||| |||| || Sbjct 198327 ACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAAAGAGTTCTTCC 198386 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| ||||| ||||||||||| || || | |||||| |||||||| || |||||||| Sbjct 198387 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGGATACCTTCCTT 198446 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||||||||||| || || || ||||| ||||| |||||| || || | ||| || Sbjct 198447 ATCTTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACCTCAAGAGTGAT 198506 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || || ||||| ||||| |||||||| Sbjct 198507 TGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCAT 198542 >seq28 Length=270198 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || |||||||| || | ||| ||||||||||| || |||||||||||||| ||||| Sbjct 52629 TTACCGGCAAAGATAAGACGTTGCTGATCTGGAGGGATACCTTCCTTATCTTGGATCTTG 52688 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||||||||| || || ||||| || || ||||| | ||| || ||||| || || Sbjct 52689 GCTTTTACATTCTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTA 52748 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| || || || ||||| Sbjct 52749 AGAGTCTTAACGAAAATTTGCAT 52771 >seq82 Length=59906 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| || | |||||| || ||||| ||||||||||| ||||| || || | Sbjct 47880 CCAGCAAAGATGAGGCGTTGTTGGTCAGGAGGAATTCCTTCCTTCTCTTGGATTTTAGAC 47821 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| ||||| ||||| || || ||||| | ||| || || ||||| || | Sbjct 47820 TTGACATTATCAATAGTATCGGATGGCTCAACTTCAAGAGTGATAGTTTTGCCAGTAAGA 47761 Query 82791 GTCTTTACAAATATCTGCATTATT 82814 || || || || || ||||| ||| Sbjct 47760 GTTTTGACGAAGATTTGCATGATT 47737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981804430813590