Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq1 84.2 4e-11 >seq1 Length=6158768 Score = 84.2 bits (92), Expect = 4e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 49016 TTGAGCTATTCTATCACCCTTGGATACATTAAATGGTATAG-AACTGAAATTAAATAATA 49074 |||||||||||||||| ||| |||| ||| || | ||| || |||||||||| Sbjct 2063175 TTGAGCTATTCTATCATTCTTATTGACATGAAA-ATCATCGTCACTAAAGTTAAATAATA 2063233 Query 49075 GAACACCTACGTTACCTCTATAGTCTGAGTCAATTACACCAGCACCTACGTCTATAAAAT 49134 |||| || || | ||| || || | |||||| ||||| ||||| ||||||| Sbjct 2063234 AAACATGGACAACTCCACGATAATCACTATCGACTACACCTGCACCAACGTCAATAAAAT 2063293 Query 49135 AATTATAAGCAAGCCCTGATCTAGGAGCTATTCTACCGTAGTATCCATTAGGTATTTTTA 49194 || |||| | ||| |||| |||||| | ||| ||||| || || || ||||||| || Sbjct 2063294 TTTTTGAAGCTAACCCAGATCGAGGAGCAACTCTCCCGTAATAACCTTTGGGTATTTGTA 2063353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903390760321600