Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq641 107 2e-18 >seq641 Length=2967 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTA 133528 ||| ||||| ||||||||||| | | |||| | ||| || | | || || ||| | Sbjct 475 CTCCTTCTGGATATTGTAATCAGCAAGCGTGCGCCCGTCTTCCAACAGCACTCCAGCGAA 416 Query 133529 AATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTG 133588 | || |||||||||| |||||||||||||||||||| |||||| ||| | | | Sbjct 415 GACCAGGCGCTGCTGGTGAGGAGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTCA-CGG 357 Query 133589 C-TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 | || | || ||| | |||||||| || | || | ||| ||||||||||| || || | Sbjct 356 CGTCGATCGAATCGCTCGGCTCCACCTCAAGGGCAATGGTCTTGCCGGTCAGGGTCTTGA 297 Query 133648 CGAAAATCTGCATGGC 133663 |||| |||||||| || Sbjct 296 CGAAGATCTGCATCGC 281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483409862604400