Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5 320 4e-82 seq15 309 7e-79 seq6 145 2e-29 seq40 141 2e-28 seq24 116 9e-21 >seq5 Length=1449561 Score = 320 bits (354), Expect = 4e-82 Identities = 584/840 (70%), Gaps = 25/840 (3%) Strand=Plus/Plus Query 110307 TTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAA 110366 |||||||| ||||| | ||||| | ||||| | | | ||| || || ||||| Sbjct 1211942 TTTGGTTTTAAAACGTTGGAACGATCATATTTGTTAAGAATTAATAGCTGTATTGTTGAA 1212001 Query 110367 CGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCT 110426 | || ||||| | ||| | |||||||| |||||||||||||| | |||||| || || Sbjct 1212002 AGACCACAACATCTTTTTATGCGTGTTGCTGTTGGTATTCATGGAGAAGATATTGAATCT 1212061 Query 110427 GTTATTGAATGTTATGA-TGTATTAAGTAAAAAGAAAGCTATT--CATGCTACTCCTACC 110483 || ||||| ||| | ||||| || || || | | || ||||| | || || Sbjct 1212062 GTACTTGAAACATATAACTGTAT---GTCTCAAAAATGGTTTTTACATGCATCACCAACA 1212118 Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAAC 110543 ||| ||| |||||||| |||||||||| | || || ||| | || ||| Sbjct 1212119 TTATATAATGCAGGAACACCAAAAGGACAATTGTCATCATGTTTTTTATTAACAATGGTG 1212178 Query 110544 GATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAAC 110603 |||||||| || ||||||||||||||| |||||||| | |||| | ||||| ||| Sbjct 1212179 GATGATTCAATAGAAGGTATTTATGATACTCTTAAAAATTGTGCTATAATTTCAAAAGGT 1212238 Query 110604 TCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATC---GCA 110660 | || ||| ||||| | ||| || ||||||| | | |||| | ||| | | Sbjct 1212239 GCAGGTGGAGTTGGTCTAAGTGTTAATAATATTCGTGCCACAGGATCTTTTATTAGTGGA 1212298 Query 110661 ACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCA 110720 ||| || || ||||| |||| | ||||| |||||| |||| || || || ||||| Sbjct 1212299 ACA---AATGGAATTTCAAATGGATTAGTTCCTATGTTACGAGTATTTAATGATACTGCT 1212355 Query 110721 AAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCT 110777 ||||| |||||||||| ||| ||| || |||||||||| ||| | ||||| Sbjct 1212356 CGTTATGTTGATCAAGGTGGAAATAAAAGACCAGGAGCATTTGCTATTTATATTGAACCA 1212415 Query 110778 TGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAA 110837 |||||| ||||||| ||| |||| ||| | ||| |||||| ||| ||||| || Sbjct 1212416 TGGCATGCAGATATTTTTCAATTTTTAAATCTTAAGAAAAATACAGGTCCGGAAGAGGAA 1212475 Query 110838 AGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTT-CA 110896 | || |||||||||||||||| | ||| || | |||||||| |||||||||||| | Sbjct 1212476 CGTGCTCGTGATTTATTTTATGGTTTATGGGTTCCTGATTTATTTATGAAACGTGTTGAA 1212535 Query 110897 AGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATA 110956 || | | || ||||| | ||||||||||| | ||| ||||| | || | Sbjct 1212536 AGGGATTCTTAT-TGGTCATTGATGTGTCCTCACGAATGTCCAGGTCTTGATAATAGTTG 1212594 Query 110957 TGGAAAAGAGTTTGAAGACCTT-TACGAAAAATATGAAAAAGAAGGCAAGTT-TCGCAAA 111014 ||| |||| |||||| || || || | ||||||||||| ||| | ||| | | | Sbjct 1212595 GGGAGAAGAATTTGAA-ACTTTATATGTTAAATATGAAAATGAA-AAACGTTATAGAAGT 1212652 Query 111015 CAAATTCCAGCTCAAGAA--CTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAA 111072 ||||| || || ||| || ||| ||||| |||| ||| |||||||||||| Sbjct 1212653 CAAAT--CAAGGCACGAATGCTCTGGCAAAAAATATGTGAAAGTCAAATTGAAACTGGAA 1212710 Query 111073 CTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAA 111132 | ||||| || | |||||||||||| |||||| ||| |||||||| |||||||||| Sbjct 1212711 CACCTTACATGGTTTATAAAGATCATTGTAATCGTAAAAGTAATCAAAATAATTTAGGAA 1212770 Score = 100 bits (110), Expect = 7e-16 Identities = 108/141 (77%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 167780 AAATAATAACAAAATTGTTTCTAATGATTTAACACCTCTATCAACATAATCACCTAAAAA 167839 || |||||| |||||| |||||| || ||| |||||||| ||||||||||| | ||| Sbjct 1250116 AAGTAATAATAAAATTACTTCTAAGGAATTACTTCCTCTATCCACATAATCACCAAGAAA 1250057 Query 167840 TATATATTTATTTTGGTTTGAAGGATTATCTAGTTTTTTAAAAATATTCAATAAATCACT 167899 || |||||| ||||| | | ||| || | | ||| ||||| || | | |||||||| Sbjct 1250056 TAAATATTT-TTTTG--TAGGAGGCTTGCCAAATTTATTAAATATTCTTATTAAATCACA 1250000 Query 167900 AAATTGACCATGTAAATCACC 167920 |||||||||||| | ||| || Sbjct 1249999 AAATTGACCATGAATATCTCC 1249979 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 352851 TTGGAGACAAGTTCGCTTCTCGATCTGCTCAAAAAGGAACAATTGGAATGTTGCTCAGTG 352910 ||||||| || || |||||| || || ||||||||| || || || ||| || | Sbjct 1209467 TTGGAGATAAATTTGCTTCTAGACATGGTCAAAAAGGTACCATGGGTATGATGTATCGCC 1209526 Query 352911 AAAAGGATATGCCTTTCGACAAAA-ATGGCTTAAAACCTGACATTATTATTAATCCAAAT 352969 || | |||||||| || |||||| | || ||| ||| || |||||||||||||| || Sbjct 1209527 AAGAAGATATGCCATTT-ACAAAAGAAGGTTTATCACCAGATATTATTATTAATCCTCAT 1209585 Query 352970 GCGATTCCCTCTAGAATGACAAT 352992 || | || ||| |||||||||| Sbjct 1209586 GCTGTACCATCTCGAATGACAAT 1209608 >seq15 Length=622252 Score = 309 bits (342), Expect = 7e-79 Identities = 598/866 (69%), Gaps = 25/866 (3%) Strand=Plus/Plus Query 110307 TTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTG-- 110364 ||||| ||||||||| | |||||| ||||| | | |||| | ||| |||| Sbjct 203074 TTTGGATTCAAAACTTTAGAACGTTCTTATCTTTTAAAAATCAA---CAAGAAAATTGCT 203130 Query 110365 -AACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 || | || ||||| | || | | ||||| |||||||||||||| | |||||| | Sbjct 203131 GAAAGACCACAACATTTACTTATGAGAGTTGCTGTTGGTATTCATGGAGAAGATATTGAT 203190 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCA--TGCTACTCCTA 110481 | ||||| ||| || || | || || | | || | | | || |||| |||| | Sbjct 203191 TCAGTTATCGAAACATACAATTT--TATGTCACAGAAATGGTTTACACATGCTTCTCCAA 203248 Query 110482 CCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCT-AGGAATT 110540 | |||||||| |||||||| | | | ||||||| |||| || |||||| | | ||| Sbjct 203249 CACTATTTAATGCAGGAACAACTCGTCCACAATTGTCTTCATG-TTTCTTATTAACAATG 203307 Query 110541 AACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAA 110600 | |||||||||||||| ||||||||| | | ||| || |||| | ||||| ||| Sbjct 203308 GCTGGAGATTCTATTGAAGGGATTTATGATACATTGAAACAATGTGCTTTAATTTC-AAA 203366 Query 110601 AACT-CTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGC 110659 | || ||||||| ||||| | | |||||| |||||| | || ||| || ||| | Sbjct 203367 ATCTGCTGGAGGTATTGGATTAAATGTTCATTGTATTCGTGCCAATGGATCATTTATTGG 203426 Query 110660 AACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGC 110719 | | || || | |||| |||| | || |||||||| ||||| |||||| | ||||| Sbjct 203427 TGGAACTAATGGAACATCAAATGGATTGGTACCAATGTTGAGAGTTTTCAACAATACTGC 203486 Query 110720 AAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACC 110776 || |||||| |||||||||| ||||||| ||| | ||||| || ||| | ||||| Sbjct 203487 AAGATATGTTGATCAAGGTGGAAATAAGAGACCTGGAGCTTTTGCAATTTATTTGGAACC 203546 Query 110777 TTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACA 110836 |||||| ||||||| | ||||| || || ||| |||||| |||| ||||| | Sbjct 203547 ATGGCATGCAGATATTATGGAATTTTTGGATCTTAAGAAAAATACAGGACCAGAAGAGGA 203606 Query 110837 AAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCA 110896 | | || ||||||||||| |||| | ||| || | ||||| || |||||||||||| | Sbjct 203607 ACGTGCTCGTGATTTATTCTATGGTTTATGGGTTCCTGATTTGTTTATGAAACGTGTTGA 203666 Query 110897 AGAAAATGGCAT-GTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTAT 110955 | || || ||| ||||| | |||||||||||| | ||| || || ||| | Sbjct 203667 AAAAGAT-TCATATTGGTCATTGATGTGTCCTCATGAATGTCCAGGATTAGAAGATTGTT 203725 Query 110956 ATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGA-AGGCAAGTTTC-GCAA 111013 || | || |||||| | | ||| ||| ||||| | || | || ||| | | || Sbjct 203726 GGGGGGATGAATTTGAAAAATTGTACACAAAGTATGAGACTGAGAAGC--GTTACAGAAA 203783 Query 111014 ACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAAC 111073 |||||| ||| | ||||| || || |||| ||| | ||||||||||| Sbjct 203784 ACAAATCAAGGCTAGGGTTATTTGGCAAAAGATTTGTGAAAGTCAAATAGAAACTGGAAC 203843 Query 111074 TCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAAC 111133 ||| ||||| | || || |||||| |||| | ||| ||||||| || || ||||| Sbjct 203844 TCCATATATGGTTTACAAGGATCATTGTAATAGAAAAAGTAATCAACAAAACTTGGGAAC 203903 Query 111134 AATTAAGTCTAGTAA--TTTGTGCTG 111157 |||||| | | ||| ||||| ||| Sbjct 203904 AATTAAATGTTCTAATCTTTGTACTG 203929 >seq6 Length=1300811 Score = 145 bits (160), Expect = 2e-29 Identities = 405/606 (67%), Gaps = 18/606 (3%) Strand=Plus/Plus Query 304889 CAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTA-TGCAGGCATCTCA 304947 ||||||||| | |||||||| | |||||| ||| |||| ||| ||| | || | || Sbjct 1074932 CAATATCATGTAGCAACATTTGTTGATAATTCTATTCCTGGTATTGCTGCTG-CAACACA 1074990 Query 304948 AAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGG-TAAAGAGGGTCGTA 305006 | |||||| ||||| ||||| || | ||| | |||||||| |||||| ||||||| Sbjct 1074991 GAAATCTGGAAGACCATTAAAATCAATCAAACAAAG-ATTAAAGGGTAAAGAAGGTCGTA 1075049 Query 305007 TTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTG 305066 |||| || ||||| |||||||||||||| |||||| ||| | | ||| || ||||| | Sbjct 1075050 TTCGTGGAAATCTTATGGGAAAACGTGTAGATTTTTCAGCACGTACTGTCATTACACCAG 1075109 Query 305067 ATTCTCAAATTA-GTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAACA 305125 || || || ||| |||| || | ||||| |||| |||||| ||| | ||| Sbjct 1075110 ATCCT-AATTTACCTCTTGATACTGTTGGAGTACCAAGAACAATTGCACAAAATATGACA 1075168 Query 305126 TTTCCAGAGAAAGTTAACGAGAAAAATATTAAACATTTGAGACGTTGTGTTCTTAATGGA 305185 || || || | |||| |||||| | | || | | ||| || || Sbjct 1075169 TTCCCTGAAATTGTTACACCTTTTAATATTGATAAATTACAAGAATTAGTTAATAGAGGT 1075228 Query 305186 AATAGCAAGTATCCAGGTGCTCGTGCTGTTATAAAACACAAGCAAAAGAAGACAATA--T 305243 || ||||||| |||||| |||| | | | ||| | | |||| | | Sbjct 1075229 GATTCTCAGTATCCGGGTGCT-----AAATATATTATTCGTGAAAATGGA-ACAAGAATT 1075282 Query 305244 CTTTGAACCATATCGATTTAA-AACAATTCAGTAAAATGCTTGAAATTAATGATATTGTT 305302 || || ||||| || || | || | | | | || ||| || | || ||| Sbjct 1075283 GATTTAA-GATATC-ATCCAAGAGCAGCTGATTTACAT-CTTCAACCTGGCTTTAAAGTT 1075339 Query 305303 ATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAA 305362 |||||| ||| ||| |||| || | |||||| | |||||| |||| || ||| Sbjct 1075340 GAAAGACATATGACTGATGGTGATATTATTGTTTTCAATCGTCAACCAACACTTCACAAA 1075399 Query 305363 ATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTA 305422 ||| |||||||| ||| | ||| ||||||||| || | | ||||| || | ||| | Sbjct 1075400 ATGAGTATGATGGGTCACAGAGTTAAAGTATTACCTTGGTCAACATTCAGAATGAATCTT 1075459 Query 305423 AGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482 || || || |||||||| ||||||||||| |||||||||||| | ||| ||||| Sbjct 1075460 TCTGTAACAACACCATATAATGCTGATTTTGATGGTGATGAAATGAATCTCCATTTACCT 1075519 Query 305483 CAATCA 305488 || ||| Sbjct 1075520 CAGTCA 1075525 >seq40 Length=203417 Score = 141 bits (156), Expect = 2e-28 Identities = 149/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 305293 TGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATC 305352 |||||||||| |||||| || |||| |||| || || || ||| | || ||||| Sbjct 141223 TGATATTGTTGAAAGACATCTGGATGATGATGACATTGTACTTTTTAATCGTCAGCCATC 141282 Query 305353 ACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCG 305412 || || ||||| ||||| ||| |||| | || ||||| || | ||| |||||||| Sbjct 141283 TCTTCACAAAATTTCTATAATGTCTCACAGAGCAAAAGTTGTACCGGGAAGAACATTTCG 141342 Query 305413 ATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATAT 305472 || |||| | |||| ||||| || |||||||| |||||||||||||||||||||||| | Sbjct 141343 TTTCAATGAATGTGCCTGTACACCATATAATGCTGATTTTGATGGAGATGAAATGAATTT 141402 Query 305473 GCATGTACCTCAATCA 305488 ||| |||| ||| || Sbjct 141403 ACATTTACCACAAACA 141418 >seq24 Length=311514 Score = 116 bits (128), Expect = 9e-21 Identities = 401/614 (65%), Gaps = 26/614 (4%) Strand=Plus/Minus Query 58737 ATTGTTCGTTTACAGCATCAATATGATTATGGTAAACGTGAGCATCTCCAATAATATGAT 58796 ||||| |||| ||| |||| |||||| ||||| |||||||||||||||| | ||| Sbjct 228979 ATTGTGTCTTTAGAGCTTCAACATGATTGCTGTAAATGTGAGCATCTCCAATAGTGTGAA 228920 Query 58797 GAACCAATC--CAGGtttttttCCTG-TCTTTTTACACATTATATGAAGCAATACGGAGT 58853 || |||| | | || ||| | ||||| | | |||||| || | |||| Sbjct 228919 CAA--AATCACCTGCTTCCAATCCACATATTTTTGCT-AGCATATGAGTCAGAAGAGAGT 228863 Query 58854 ATGAAACCATATTAAAAGGGATTCCAAGAAACATATCACCACTACGTTGATAAAATTGT- 58912 | ||| | ||||| ||||| | |||||| | ||| ||||| |||||||| ||||| Sbjct 228862 AAGAAGCAATATTGAAAGGAACTCCAAGTCCTACATCTCCACTGCGTTGATACAATTGAC 228803 Query 58913 AGATTAAGAGTGTCATCTGCTTCTACATAAAATTGACATAAAATATGACAAGGAGGAAGT 58972 || |||| | ||||| | |||||||||||| ||| |||| || ||||| || Sbjct 228802 AGCTTAACTCTC-CATCT---TGAACATAAAATTGAACCAAAGTATGGCATGGAGGGAGA 228747 Query 58973 GCCATTTTATCAATATCACTTACATTCCATGCACTGAAAATAATGCGACGAGAATGAGGG 59032 ||||| ||||| |||| ||||||||| || || || | ||||||| ||| Sbjct 228746 ACCATTAAATCAAGATCAGAAGGATTCCATGCTGATAAGATTATTCTTCGAGAATCTGGG 228687 Query 59033 TCATTTTTAATAAGTTCTTCACAATGTTTTATTTGGTCAAATCCATTAGTATATTCAGT- 59091 | ||||||||| | || || || | ||| |||| ||| || | | || Sbjct 228686 TTATTTTTAATTTGATCAACAACCTGAGCCAATTGATCAACTCCCTT----TCCTGTGTA 228631 Query 59092 ATTGGCATCAA------TGTATTTATCTCCCCAATAACGCCATTGAAAACCATATACAGG 59145 || |||||||| |||||| |||| ||| | ||||||||| || || || || Sbjct 228630 ATCGGCATCAACTCCTTCATATTTAGCTCCAAAATGTCTCCATTGAAATCCGTAAACTGG 228571 Query 59146 TCCAAGAGTTCCTTCAGGATATTCATTTAAACCACGAGAGTCAAGAAATTCTCTTGTTGA 59205 || | | ||| || || ||| | || ||| || || | |||| ||| | Sbjct 228570 ACCTAAATCTCCCTCTGGTCGTTCTGTAAATCCAAGATTATCCAAGAATTGTCTACTACC 228511 Query 59206 ATTACCATCCCAAATATGAACATTATTATCATTAAGAGATTTATTATCTGTTTTTCCAGA 59265 |||| |||||||| | ||| || ||| | | | || || || | ||||| Sbjct 228510 ATTAGGTTCCCAAATCTTGACACCCTTTTCAGTCAAAACCTTCGCATTAGTACTACCAGA 228451 Query 59266 TAGAAACCATAACAATTCCTTAATGCAA--ATTTTCCAAGCAACtttttttGTTGTAAGC 59323 | |||||| |||||||| | || ||| ||||||| | | |||||||||| | Sbjct 228450 AATAAACCACAACAATTCTTCAA--CAATCCCTTTCCAAAATGTTCTCTTTGTTGTAATC 228393 Query 59324 ATTGGAATTTTACC 59337 | || ||| |||| Sbjct 228392 AGCGGCATTGTACC 228379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186785277069410