Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq547 105 4e-18 >seq547 Length=3469 Score = 105 bits (116), Expect = 4e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| ||||| ||| ||||| |||||||| || ||||| || | | | || || | ||| Sbjct 1618 ATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTTCTTCCATCTTCAAGTTG 1677 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 |||||||||||| || | ||| || |||||| | || | ||||||||||| ||| || Sbjct 1678 TTTTCCGGCAAAGATAAGACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATCTT 1737 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 | || || | ||| | ||||| || ||| || |||| || || ||||| || | Sbjct 1738 -GGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATTGTTTTTCCAG 1796 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || ||||| || ||||| Sbjct 1797 TTAAAGTCTTAACAAAAATTTGCAT 1821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328696748995200