Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq547 113 1e-19 seq29 91.5 3e-13 >seq547 Length=3469 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || |||||||| || ||| | ||||| ||| |||||||| |||| || || Sbjct 1797 ACTGGAAAAACAATTACTCTTGAAGTTGAACCATCTGACACTATCGACAACGTCAAATCC 1738 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| ||||||||||| || || ||| | |||||||| |||||||| Sbjct 1737 AAGATTCAAGACAAAGAAGGAATCCCACCAGATCAACAACGTCTTATCTTTGCCGGAAAA 1678 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | ||||||||||| ||| | | || |||||| |||| || ||||| ||||| || Sbjct 1677 CAACTTGAAGATGGAAGAACTCTCTCTGACTACAACATCCAAAAGGAGTCAACTCTCCAT 1618 Query 206374 CTTGTTTTGAGACTTCG 206390 || ||| | | ||||| Sbjct 1617 CTCGTTCTCCGTCTTCG 1601 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || ||||| || |||||| | || || ||| ||| || Sbjct 1590 CAGATTTTTGTTAAGACTTTAACTGGAAAGACAATCACTCTTGAGGTTGAACCTTCCGAT 1531 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||||||| || ||||| || || ||| ||| Sbjct 1530 ACTATTGACAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATCCCTCCAGACCAACAA 1471 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||| || || |||||||| | ||||||||||| ||| | | ||||| || | Sbjct 1470 CGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAATATT 1411 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| || || |||||| | ||| | | ||||| Sbjct 1410 CAAAAAGAATCAACCCTTCACTTGGTTCTCCGTCTTCG 1373 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | | ||| || || ||||| ||||| || |||| || ||||||| | ||| Sbjct 1601 CGAAGACGGAGAACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTT 1660 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||| || || |||||||| |||||||| ||||||||| Sbjct 1661 CTTCCATCTTCAAGTTGTTTTCCGGCAAAGATAAGACGTTGTTGA 1705 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | | ||| | |||||| || || ||||| || | |||||| |||| | ||| Sbjct 1373 CGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAAAGAGTT 1432 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||||||||| || |||||||| || || ||||| |||||||| Sbjct 1433 CTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTG 1476 >seq29 Length=268433 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || ||||| || |||||| | || || ||| ||| || Sbjct 198539 CAGATTTTTGTTAAGACTTTAACTGGAAAGACAATCACTCTTGAGGTTGAACCTTCCGAT 198480 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||||||| || ||||| || || ||| ||| Sbjct 198479 ACTATTGACAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATCCCTCCAGACCAACAA 198420 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||| || || |||||||| | ||||||||||| ||| | | ||||| || | Sbjct 198419 CGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAATATT 198360 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| || || |||||| | ||| | | ||||| Sbjct 198359 CAAAAAGAATCAACCCTTCACTTGGTTCTCCGTCTTCG 198322 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | | ||| | |||||| || || ||||| || | |||||| |||| | ||| Sbjct 198322 CGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAAAGAGTT 198381 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||||||||| || |||||||| || || ||||| |||||||| Sbjct 198382 CTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTG 198425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181793392837010