Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_025422.1 Length=155997 Score E Sequences producing significant alignments: (Bits) Value seq24 111 2e-19 >seq24 Length=311514 Score = 111 bits (122), Expect = 2e-19 Identities = 301/454 (66%), Gaps = 14/454 (3%) Strand=Plus/Minus Query 23044 TTGGATGAGATTGGTAATTGATAAGCTCAAAGTCTTCGAAAGTAAAGTCATCAATAGTCT 23103 |||||||| | | |||||| || ||| || || | | || |||||||| || | Sbjct 229093 TTGGATGACACTTGTAATTTTCTAGAACAATGTTCTCTGACTTGAAATCATCAATGGTAT 229034 Query 23104 TTTGATT---ACCATTGATTTTAATTTTCGGGAAAGGATATAAAGGGGTTCTTGAA--AG 23158 | |||| |||| | ||| ||| | || || |||||| ||||| ||| | Sbjct 229033 TAAGATTCTCACCAACAAATTTGATTGTTGGAAATGGATAT-----GGTTCACGAACTAA 228979 Query 23159 TTGT-TCTTTTGCTCCATCGACATGATTTACATACAAATGAGCATCAACAATTGTATGGA 23217 |||| ||||| | | || |||||||| || | |||||||| |||| || || | Sbjct 228978 TTGTGTCTTTAGAGCT-TCAACATGATTGCTGTAAATGTGAGCATCTCCAATAGTGTGAA 228920 Query 23218 CAAATTCACCAGCTTTTAGTCCAGTAATCTTTGCAACCATATGAGTCAAAAGAGAATAGA 23277 |||| ||||| |||| | |||| || ||||| | ||||||||||| |||||| || Sbjct 228919 CAAAATCACCTGCTTCCAATCCACATATTTTTGCTAGCATATGAGTCAGAAGAGAGTAAG 228860 Query 23278 AAGCAATATTGTATGGAATTCCGAGGGCAGTATCTCCAGAACGCTGCAAAAGATGGCAGT 23337 ||||||||||| | |||| ||| || | ||||||| || || | | || ||| Sbjct 228859 AAGCAATATTGAAAGGAACTCCAAGTCCTACATCTCCACTGCGTTGATACAATTGACAGC 228800 Query 23338 TGAGCTTACCTTTAGTCACTCCAAATTGAAATGTCATATGACAAGGAGGTAGCGCCATTT 23397 | | || || | || |||||||| |||| || ||||| || ||||| Sbjct 228799 TTAACTCTCCATCTTGAACATAAAATTGAACCAAAGTATGGCATGGAGGGAGAACCATTA 228740 Query 23398 GATCAATTTCACCAGGATTCCAAGCAG-TCACAATATGTCTACGCGAATATGGATTGGTC 23456 ||||| ||| ||||||||| || | | | | ||| ||| || |||| ||| || | Sbjct 228739 AATCAAGATCAGAAGGATTCCATGCTGATAAGATTAT-TCTTCGAGAATCTGGGTTATTT 228681 Query 23457 TTGATATCTTCAATTACTTTCGCGAGTTGATCAA 23490 || || | |||| || | || | |||||||| Sbjct 228680 TTAATTTGATCAACAACCTGAGCCAATTGATCAA 228647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499051108713200