Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq858 140 3e-28 >seq858 Length=1962 Score = 140 bits (154), Expect = 3e-28 Identities = 180/244 (74%), Gaps = 11/244 (5%) Strand=Plus/Minus Query 142552 CGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATGGCACTTCCTCCG 142611 || || |||||||||| ||| |||||||| || || || ||||||||||| || || || Sbjct 1906 CGCCGCCACATCGTCAGCGCCTGGAACCCGGCCGATGTGGACGACATGGCGCTGCCGCCC 1847 Query 142612 TGTCACATGATGTTCCAATTCCACGTCGACTCGAAGAAGCGTCTGTCATGCCAGCTGTAT 142671 || ||| ||||||||||| ||||| ||| | | | ||| |||||||||||| Sbjct 1846 TGCCACTGCCTGTTCCAATTCTTCGTCG--CCGACGGAAAG-CTGAGCTGCCAGCTGTAT 1790 Query 142672 CAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCGTACGCGCTTCTC 142731 || || || || || |||||| || || ||||||||||| || || ||||| || ||| Sbjct 1789 CAACGCTCAGCCGATGTGTTCCTAGGGGTGCCGTTCAACATCGCCTCCTACGCCCTGCTC 1730 Query 142732 ACACAGCTCATTGCTCGCGAATG----CGGTCTGGAACTCGGAGACTTCGTCCACACCTT 142787 || || || |||| || || | || ||||| | || || |||||||||||||| Sbjct 1729 AC---GCACA-TGCTGGCCAAGGTCGTGGGGCTGGAGCCGGGCGATTTCGTCCACACCTT 1674 Query 142788 CGGC 142791 |||| Sbjct 1673 CGGC 1670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500487876205600