Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq5 118 1e-21 seq547 93.3 4e-14 seq29 82.4 7e-11 >seq5 Length=1449561 Score = 118 bits (130), Expect = 1e-21 Identities = 305/457 (67%), Gaps = 6/457 (1%) Strand=Plus/Minus Query 146572 GCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCGCCACGAGTGA 146631 || || ||||| || | ||||||||||| || ||||| | ||| | ||| | || Sbjct 1213749 GCAGCTGGTTTCGTTCTTAAATAATACATCCCTGTTTTTAAACCAAGTTTCCATCCGCGA 1213690 Query 146632 TTGTGAATCGAAGT-CATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTG 146690 || || ||| | ||| || |||| | || | || || ||| ||||| ||||| Sbjct 1213689 AAATGTATGGAACTACAT-ATTCCGTAAGATGGTTTTGCTACATAAATATTAAGAGATTG 1213631 Query 146691 GCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATG-CGTTTTGTCTTCA 146749 | |||||| || || || | || || ||||| ||||| ||| | ||||| | | Sbjct 1213630 GGATTGATCAATAAATGCTCCTCTATCTGCAGCCATATCAATGATGTCCTTTTGAGAT-A 1213572 Query 146750 TTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAA 146809 ||||||| |||| || |||| |||||| ||||||||| |||| ||| | || | Sbjct 1213571 TTTCCCATACGGTCTTATACAAATCCTTAATATGATCTGGAATTCCTTTAATATGTTTTA 1213512 Query 146810 TAGAGCCCTTGTGCGCAAA-AATAGTGTTTCGTATTTCGGGCGTGTAAAGGTTTAGTTTA 146868 |||| || || | || ||| | |||| || ||| | | | |||| || | Sbjct 1213511 TAGATCCATTATAATAAATTAATTG-GTTTAATAATTCATCATTCCACAAATTTAATTCA 1213453 Query 146869 ATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTG 146928 | | || | | | | | || ||||||||||| || || | || || ||||| Sbjct 1213452 ACCAAATCGTGTAAAAGGTGTGGGTTTACCACTTGAAAATCTCCAGACAATACCCGTCTC 1213393 Query 146929 AGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTG 146988 | ||||| ||| ||| |||| ||||| ||||||||||| || || ||||| || || Sbjct 1213392 ATATACAAATTTGAAGTATAAGGTTCAAATGACTCATTATTACCAAAAATTTGAGCAGTT 1213333 Query 146989 GTTGCGGTAGGCATGTACGCCACCAACAATGAATTTC 147025 | ||| || ||||| || |||||||||||||||| Sbjct 1213332 GATGCTGTTGGCATTGGAGCTACCAACAATGAATTTC 1213296 >seq547 Length=3469 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| ||||| ||||||||||| | || | |||||| || ||||| |||| Sbjct 1626 TTGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCGG 1685 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||| ||||| ||||||||||| || || |||||||| || ||| || ||| | Sbjct 1686 CAAAGATAAGACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATCTTGGATTTGA 1745 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | ||| || | || || ||||| | || | ||||| ||||| | ||| | Sbjct 1746 CGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATTGTTTTTCCAGTTAAAGTCT 1805 Query 132108 TTATGAAAATCTGCAT 132123 | | ||||| ||||| Sbjct 1806 TAACAAAAATTTGCAT 1821 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | |||| ||||||||||| || || || | || | |||||| Sbjct 1384 AACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCTTC 1443 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || || || || | | | || ||||| ||||| |||||||| || ||||| ||||| Sbjct 1444 AAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTG 1503 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| ||| || | | || | |||||||| || || || || | || | || || Sbjct 1504 AATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACCTCAAGAGTGATTGTCTT 1563 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| | ||| || | ||||||||||| Sbjct 1564 TCCAGTTAAAGTCTTAACAAAAATCTGCAT 1593 >seq29 Length=268433 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | |||| ||||||||||| || || || | || | |||||| Sbjct 198333 AACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCTTC 198392 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || || || || | | | || ||||| ||||| |||||||| || ||||| ||||| Sbjct 198393 AAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTG 198452 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| ||| || | | || | |||||||| || || || || | || | || || Sbjct 198453 AATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACCTCAAGAGTGATTGTCTT 198512 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| | ||| || | ||||||||||| Sbjct 198513 TCCAGTTAAAGTCTTAACAAAAATCTGCAT 198542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476600416671600