Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq547 102 7e-17 seq29 102 7e-17 >seq547 Length=3469 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || ||||| ||||| | ||||| | || || ||| | | Sbjct 1593 ATGCAGATTTTTGTTAAGACTTTAACTGGAAAGACAATCACTCTTGAGGTTGAACCTTCC 1534 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || || ||| ||| ||||| || ||||| || || || || Sbjct 1533 GATACTATTGACAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATCCCTCCAGACCAA 1474 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || |||| | || || ||||| ||||||| |||| | | ||||| ||| Sbjct 1473 CAACGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAAT 1414 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||||||||| ||| |||| || || Sbjct 1413 ATTCAAAAAGAATCAACCCTTCACTTGGT 1385 >seq29 Length=268433 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || ||||| ||||| | ||||| | || || ||| | | Sbjct 198542 ATGCAGATTTTTGTTAAGACTTTAACTGGAAAGACAATCACTCTTGAGGTTGAACCTTCC 198483 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || || ||| ||| ||||| || ||||| || || || || Sbjct 198482 GATACTATTGACAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATCCCTCCAGACCAA 198423 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || |||| | || || ||||| ||||||| |||| | | ||||| ||| Sbjct 198422 CAACGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAAT 198363 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||||||||| ||| |||| || || Sbjct 198362 ATTCAAAAAGAATCAACCCTTCACTTGGT 198334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445084329739200