Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_026594.1 Length=56537 Score E Sequences producing significant alignments: (Bits) Value seq138 123 9e-24 >seq138 Length=21122 Score = 123 bits (136), Expect = 9e-24 Identities = 287/428 (67%), Gaps = 10/428 (2%) Strand=Plus/Minus Query 36696 CGAGCTGACCGTCTCCCTCGGCCCTGCGGGCACCGGGAAGACCTTCCTGGCCATTCACCA 36755 |||||||||| || | ||||||| |||||||| || |||||||||||||| | | Sbjct 2889 CGAGCTGACCTTCGGCGTCGGCCCGGCGGGCACGGGCAAGACCTTCCTGGCGGCGGCCTA 2830 Query 36756 CGGACTGCGCCTGCTGGAGGCCAAGGAAATCCAGCGACTCGTCATCACTCGCCCCGCCGT 36815 ||| ||||||| || | | | | || || |||||||| ||||| || || Sbjct 2829 CGGCGCCTCCCTGCTGAAGCGGGGGCAGGTGGACCGGCTGGTCATCACCCGCCCGGCGGT 2770 Query 36816 CGAGGCCGAGGAGAAGCTCGGCTACCTGCCCGGCGGCATCGAAGAGAAGATGGCTCCGTA 36875 |||||| | ||||| || |||| ||||| |||| || | || ||| | | || || Sbjct 2769 CGAGGCGGGTGAGAATCTGGGCTTTCTGCCAGGCGATATGAAGGAAAAGGTTGACCCCTA 2710 Query 36876 CCTGATCCCGATGCTGGACGCGGTGATCGACCTGGTTGGCCCG-ACGATGGCCAAGCGCC 36934 ||| |||||| ||| || ||| |||| | | ||| | |||| | | |||| Sbjct 2709 TCTGGCCCCGATCTGGGAGTCGCTGAACGACATCCTGGGCGTGGACGACGTGCGC-CGCC 2651 Query 36935 TGCAGGAGACCCGCCAGCTCGAGATCGCCCCGCTGGCCTACATGCGAGGCCGAACCTTCA 36994 | |||| | || ||||| |||||| | |||| |||||| ||||| || ||| Sbjct 2650 GCCGCGAGAAGGGGGAGATCGAGGCCGCCCCCATCGCCTTCATGCGCGGCCGCACGCTCA 2591 Query 36995 ACGACACGTTCCTCATCGCCGACGAGATGCAGAACGCCACCCCGCGACAGGCCGC----G 37050 | || | ||| |||||| ||| ||| ||||||| ||| |||| || || | | Sbjct 2590 GCCACGCCTTCATCATCGTCGATGAGGCGCAGAAC---ACCTCGCG-CATGCAGATGAAG 2535 Query 37051 CTGCTGGTGACCCGCCTGGGCTTCGGAACGCGGGCCGTCTTGAACGGTGACCCGGCCCAG 37110 || || |||||||||||||| || |||| || ||| || |||||| | ||| Sbjct 2534 ATGGTGCTGACCCGCCTGGGCGAGGGCGCGCGCATGGTGGTGACGGGCGACCCGTCGCAG 2475 Query 37111 TGCGACCT 37118 |||||| Sbjct 2474 GTCGACCT 2467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180792913998780