Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq547 136 4e-27 seq5 107 2e-18 >seq547 Length=3469 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| | || || | ||||| || || || || |||||||| ||||||||||| | Sbjct 1595 CCTCCACGAAGACGGAGAACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCAGAG 1654 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | | | | || || || ||||| || ||||| || | ||| || ||||| || || Sbjct 1655 AGAGTTCTTCCA-TCTTCAAGTTGTTTTCCGGCAAAGATAAGACGTTGTTGATCTGGTGG 1713 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| |||||||| || |||||| ||| | ||||| || | ||| || Sbjct 1714 GATTCCTTCTTTGTCTTGAATCTTGGATTTGACGTTGTCGATAGTGTCAGATGGTTCAAC 1773 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || |||||||| ||||| || |||||||| ||||| |||||||||||| Sbjct 1774 TTCAAGAGTAATTGTTTTTCCAGTTAAAGTCTTAACAAAAATTTGCATT 1822 >seq5 Length=1449561 Score = 107 bits (118), Expect = 2e-18 Identities = 168/236 (71%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 9085 CACATTAAAGAGCTGTATAAAACCGTTTGGGAAATGAAGCAAA-GCACGCTGATCGGCAT 9143 || ||||| || ||||||| ||||| |||||||| |||| | || | || | || Sbjct 1213538 CATATTAAGGATTTGTATAAGACCGTATGGGAAATATCTCAAAAGGACA-TCATTGATAT 1213596 Query 9144 GGCTGCGGATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTAACGTGTTCGTAGCCGC 9203 |||||| |||||||| || ||||||||||| |||||| |||| | | ||||| Sbjct 1213597 GGCTGCAGATAGAGGAGCATTTATTGATCAATCCCAATCTCTTAATATTTATGTAGCAAA 1213656 Query 9204 ACCAACTTACGC--TTTGATGTCCAGCATTCATTATTTAACTTGGAAAATGGGTTTAAAA 9261 |||| |||||| | || || | ||| |||| | |||||| | ||||||||| Sbjct 1213657 ACCATCTTACGGAATATGTAGTTC--CATACATTTTCGCGGATGGAAACTTGGTTTAAAA 1213714 Query 9262 ACAGGCATGTACTATTTGCGCACAAAACCCGCCGCTGAACCTATCAAATTTACAGT 9317 ||||| ||||| ||||| | || ||||| || || | ||| | |||||| |||| Sbjct 1213715 ACAGGGATGTATTATTTAAGAACGAAACCAGCTGCAAATCCTGTAAAATTTTCAGT 1213770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505386965361200