Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_027402.1 Length=240413 Score E Sequences producing significant alignments: (Bits) Value seq858 105 1e-17 >seq858 Length=1962 Score = 105 bits (116), Expect = 1e-17 Identities = 134/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 198335 TGTCAGCTCTATCAACGCAGTGCGGATTTTTTCCTCGGCGTGCCGTTCAACATCGCGTCT 198394 || ||||| ||||||||| || ||| | ||||| || ||||||||||||||||| || Sbjct 1801 TGCCAGCTGTATCAACGCTCAGCCGATGTGTTCCTAGGGGTGCCGTTCAACATCGCCTCC 1742 Query 198395 TACGCATTACTCGTGCACATGGTTGCCCAGCAGGTTAACATGGTGCCGGGCGATTTCATT 198454 ||||| | ||| ||||||| | ||| || || ||| ||||||||||||| | Sbjct 1741 TACGCCCTGCTCACGCACATGCTGGCCAAGGTCGTGGGGCTGGAGCCGGGCGATTTCGTC 1682 Query 198455 TGGACGGGCGGTGACACACATCTCTACTCT-AATCATCTGGAGCAGGCCAAGCTCCAGCT 198513 || ||| ||| | || || || ||| || ||||||||||||||| |||| || || Sbjct 1681 CACACCTTCGGCGACGCCCACCTGTA-TCTGAACCATCTGGAGCAGGCCGAGCTGCAACT 1623 Query 198514 GA 198515 || Sbjct 1622 GA 1621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769176196994800