Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq22 217 1e-51
seq39 172 4e-38
seq24 125 6e-24
>seq22
Length=331233
Score = 217 bits (240), Expect = 1e-51
Identities = 487/725 (67%), Gaps = 15/725 (2%)
Strand=Plus/Plus
Query 19223 GGAATGTGAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTA 19282
||| | |||||| ||| |||||| || || |||||| ||||||| ||||||| | |
Sbjct 18064 GGATTTTGAAAGT-ATGGGAATTGGTGGTTTAGATAAAGAATTTTCTGCAATCTTTAGAA 18122
Query 19283 GAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAA-TTGGGATGTAAACAT 19341
|||| || | | | ||| || |||| || ||||| |||| ||| ||||||
Sbjct 18123 GAGCCTTCTTTAGTAGATTATTTCCTCCAGAACAAGTTGAACAACTTGGAATG-AAACAT 18181
Query 19342 GTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAA 19401
|||||||| | || | ||||| ||||| || || ||||| |||||||| | ||
Sbjct 18182 GTTCGTGGTATCTTATTGTATGGACCACCTGGAACAGGTAAAACTTTAATTGCCCGTCAA 18241
Query 19402 CTTAGTAAA---TTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTA 19458
| ||||| ||| | | | | ||||| |||||||| ||||| || |||| ||
Sbjct 18242 ATCGGTAAAATGTTAAATGCTAGAGAACCT---AAAATTGTTAATGGACCACAAATTCTA 18298
Query 19459 AATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAA 19518
| |||||||| ||| || |||| ||| || || || ||||| || || ||||||
Sbjct 18299 GACAAATATGTTGGTGAAAGTGAAGCCAATATAAGAAAATTATTTGCAGATGCAGAAGAA 18358
Query 19519 GAACAAAAACGTTTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGAC 19578
||| || | | || ||| |||| || ||||| || | |||||| | ||
Sbjct 18359 GAATTTAAGAGATGTGGTAACAATTCAGCTTTACATATTATTATTTTTGATGAAATTGAT 18418
Query 19579 GCAATCTGTAAGCAAAGAGGTTC---TGGTGTAA---ATGGAGTACATGACACTGTTGTC 19632
|| || |||||||||||||| | | || || || || || || || || ||
Sbjct 18419 GCTATTTGTAAGCAAAGAGGAACACAAGCTGGAAGCTCCGGTGTTCACGATACAGTAGTA 18478
Query 19633 AATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGC 19692
|||||| | || |||| | || |||||| | ||| | |||||||| |||||||| ||
Sbjct 18479 AATCAAATTTTGACAAAGATGGATGGTGTTGATCAATTAAATAATATATTAGTTATCGGT 18538
Query 19693 ATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATA 19752
||||| |||||| || | || || || || ||| |||| ||| | ||||| ||
Sbjct 18539 ATGACAAATAGAAGAGATATGATTGATGAAGCTTTGTTAAGACCTGGTAGAATGGAAGTA 18598
Query 19753 AAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACA 19812
| || ||||| ||||| |||||| ||| ||||| |||||||| ||||||| |||
Sbjct 18599 CAAATGGAAATATCATTACCAGATGAAAATGGTCGTGTACAAATTTTACACATACACACA 18658
Query 19813 TCAACCATGCGACAAAATAACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCG 19872
|| ||| || || | || |||| | ||||| ||| || ||||| | || |
Sbjct 18659 GGAAAGATGAGAGAATTTGACAAATTAAGTCCTGATGTTGATTTAAAAGAATTAGCTAAG 18718
Query 19873 GCTACCAAAAACTATAGCGGCGCAGAACTTGAGGGATTAGTGAGGGCCGCCCAATCAATT 19932
|| ||||| | || || || | || || ||||| || || || ||||||| |
Sbjct 18719 AAGACAAAAAATTTCTCTGGTGCTGAGTTGGAAGGTTTAGTTAGAGCAGCTCAATCAAGT 18778
Query 19933 GCAAT 19937
|| ||
Sbjct 18779 GCTAT 18783
>seq39
Length=206625
Score = 172 bits (190), Expect = 4e-38
Identities = 516/776 (66%), Gaps = 38/776 (5%)
Strand=Plus/Minus
Query 43825 ACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAG 43883
|||| |||| | | ||||||||| || | || || |||||||| ||| || || |
Sbjct 49409 ACAATGAAAGATACTTTATATCTCGTGTCCTAGCCTTCTTTGCTGCTTCCGATGGAATTG 49350
Query 43884 TCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTT 43943
||||||||||||||||| | ||| | ||||||| ||| | || |||||||| | |
Sbjct 49349 TCAATGAAAATTTGGTTGAAAGATTTTCAAAAGAAGTCCAAGTCCCTGAAGCACGTTTCT 49290
Query 43944 TTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC----AGTCTTCTG 43999
||||||| ||||||||||| || || ||||||||| || ||||| ||| |
Sbjct 49289 TTTATGGATTTCAAATTGCTATGGAGAATATTCATAGTGAGATGTATTCCAAGT----TA 49234
Query 44000 ATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACA 44059
|| || || || ||| || | || | || | || ||||| || |||
Sbjct 49233 ATTGAAACATATATCCGTGACACTGATGAAAGAAATAAGCTTTTCAATGCTTTA---ACA 49177
Query 44060 GTACCTGCGATTAAACATAAAGCAGACTG---GGCCCTTAA-ATGGATAAAT--TCA-AA 44112
| || ||| | || ||| || ||| || | |||| |||||| || | | ||
Sbjct 49176 GAGTTTGA-ATTTATCAAGAAGAAGGCTGATTGGGCTTTAAGATGGATTAACGATAAGAA 49118
Query 44113 TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG 44172
|| |||||||||||||| || | || ||||| | ||| ||||| || || || || ||
Sbjct 49117 TGCATCTTTTGGAGAACGTATTATTGCTTTTGCCGCTGTTGAAGGAATATTTTTCTCTGG 49058
Query 44173 ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTC 44232
|| ||||| | || ||||||||||| ||||| || || ||||| || ||| |||
Sbjct 49057 TTCTTTTGCTTCAATCTTTTGGTTAAAAAAACGTGGATTAATGCCAGGTTTGTGTCATTC 48998
Query 44233 AAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGG 44292
|||||| ||||| | |||||||| |||||| | ||||||||||| | | || |
Sbjct 48997 AAATGAATTAATCTCCAGAGATGAAGGATTACATAGAGATTTTGCTTGTCTCATGTTTAG 48938
Query 44293 ATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACA-GATATTGTTGTAGAGGCAG 44351
||||| |||| |||| || || |||| | | || || || || | | || |
Sbjct 48937 TTATCT-TGAGA--ATAAACCGTC-TGTAGAGCGTGTGCATGAAATAATTAGAAATGCTG 48882
Query 44352 TAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATG 44411
| | || || | |||| | | || || | ||||| || | || || ||||||
Sbjct 48881 TCGAAATTGAGAAGGAATATTTAACTGATGCTCTTCCTGTTGATATGATTGGTATGAATT 48822
Query 44412 AACTTTTGA--TGAACCAATATATTGAATACATTGCAGATCGTTTACTTTT---GGAACT 44466
| || | || ||| || |||||||| |||| |||| ||||| |||||
Sbjct 48821 CAAGATTAATGTGTACC--TACATTGAATATGTTGCTGATC---ACCTTTTAACTGAACT 48767
Query 44467 -GGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGT 44525
||| | ||| |||| || |||| || |||||||| |||| ||| ||||
Sbjct 48766 AAACATGCCA-AAAATTTATAAGGTTAAAAATCCATTTGATTTCATGGTAAACCTTTCAA 48708
Query 44526 TGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGA-ATGGG 44580
| ||||| || ||||| || |||||||| ||| |||||||| || |||||
Sbjct 48707 TTGAAGGAAAGACAAATTTCTTTGAAAAGAAAGTTTCTGAATATCAAAGATATGGG 48652
>seq24
Length=311514
Score = 125 bits (138), Expect = 6e-24
Identities = 374/574 (65%), Gaps = 10/574 (2%)
Strand=Plus/Plus
Query 40695 CCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGGTTT 40754
||| || | || ||||| | || ||||||||||| |||| |||||| |||| ||||||
Sbjct 228388 CCGCTGATTACAACAAAGAGAACATTTTGGAAAGGGATTGTTGAAGAATTGTTGTGGTTT 228447
Query 40755 ATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAATGCG 40814
|| ||| |||||||||| ||| || | |||| || || | |||||| | |
Sbjct 228448 ATTTCTGGTAGTACTAATGCGAAGGTTTTGACTGAAAAGGGTGTCAAGATTTGGGAACCT 228507
Query 40815 CACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGATCTT 40874
| || || | || ||| || | ||||| ||| | || || ||| |
Sbjct 228508 AATGGTAGTAGACAATTCTTGGATAATCTTGGATTTACAGAACGACCAGAGGGAGATTTA 228567
Query 40875 GGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTACTCT 40934
||||| ||||| |||||||| | | ||||||||||||| |||||||| | | |
Sbjct 228568 GGTCCAGTTTACGGATTTCAATGGAGACATTTTGGAGCTAAATATGAAGGAGTTGATGCC 228627
Query 40935 GATTATACCAATAAAGGAATGGATCAATT---ACAGTGCGTTATAGATACGATTAAATCC 40991
||||| || || ||| | |||||||| ||| ||| | ||| ||||||
Sbjct 228628 GATTACACAGGAAAGGGAGTTGATCAATTGGCTCAG---GTTGTTGATCAAATTAAAAAT 228684
Query 40992 GATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATG 41051
| || ||| ||| | ||||| || | || ||||| || | || | |||| |||
Sbjct 228685 AACCCAGATTCTCGAAGAATAATCTTATCAGCATGGAATCCTTCTGATCTTGATTTAATG 228744
Query 41052 GCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGT 41111
| | || || || ||| || ||| ||||| ||| |||| || | |||
Sbjct 228745 GTTCTCCCTCCATGCCATACTTTGGTTCAATTTTATGTTCAAGATGGAGAGTTAAGCTGT 228804
Query 41112 CAATTGTATCAAAGATCAGGTGACATG--GGACTAGGGGTCCCGTTTAACATAGCGAGTT 41169
|||||||||||| | ||| || ||| ||||| || || || || || || || ||
Sbjct 228805 CAATTGTATCAACG--CAGTGGAGATGTAGGACTTGGAGTTCCTTTCAATATTGCTTCTT 228862
Query 41170 ATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTC 41229
| |||| || || ||||| | ||| | | || || | ||||| |||||||
Sbjct 228863 ACTCTCTTCTGACTCATATGCTAGCAAAAATATGTGGATTGGAAGCAGGTGATTTTGTTC 228922
Query 41230 ACACGTTAGGAGATGGACATATTTACATTAATCA 41263
|||| | ||||||| || ||||||| |||||
Sbjct 228923 ACACTATTGGAGATGCTCACATTTACAGCAATCA 228956
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397447232369050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |