Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq22 217 1e-51 seq39 172 4e-38 seq24 125 6e-24 >seq22 Length=331233 Score = 217 bits (240), Expect = 1e-51 Identities = 487/725 (67%), Gaps = 15/725 (2%) Strand=Plus/Plus Query 19223 GGAATGTGAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTA 19282 ||| | |||||| ||| |||||| || || |||||| ||||||| ||||||| | | Sbjct 18064 GGATTTTGAAAGT-ATGGGAATTGGTGGTTTAGATAAAGAATTTTCTGCAATCTTTAGAA 18122 Query 19283 GAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAA-TTGGGATGTAAACAT 19341 |||| || | | | ||| || |||| || ||||| |||| ||| |||||| Sbjct 18123 GAGCCTTCTTTAGTAGATTATTTCCTCCAGAACAAGTTGAACAACTTGGAATG-AAACAT 18181 Query 19342 GTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAA 19401 |||||||| | || | ||||| ||||| || || ||||| |||||||| | || Sbjct 18182 GTTCGTGGTATCTTATTGTATGGACCACCTGGAACAGGTAAAACTTTAATTGCCCGTCAA 18241 Query 19402 CTTAGTAAA---TTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTA 19458 | ||||| ||| | | | | ||||| |||||||| ||||| || |||| || Sbjct 18242 ATCGGTAAAATGTTAAATGCTAGAGAACCT---AAAATTGTTAATGGACCACAAATTCTA 18298 Query 19459 AATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAA 19518 | |||||||| ||| || |||| ||| || || || ||||| || || |||||| Sbjct 18299 GACAAATATGTTGGTGAAAGTGAAGCCAATATAAGAAAATTATTTGCAGATGCAGAAGAA 18358 Query 19519 GAACAAAAACGTTTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGAC 19578 ||| || | | || ||| |||| || ||||| || | |||||| | || Sbjct 18359 GAATTTAAGAGATGTGGTAACAATTCAGCTTTACATATTATTATTTTTGATGAAATTGAT 18418 Query 19579 GCAATCTGTAAGCAAAGAGGTTC---TGGTGTAA---ATGGAGTACATGACACTGTTGTC 19632 || || |||||||||||||| | | || || || || || || || || || Sbjct 18419 GCTATTTGTAAGCAAAGAGGAACACAAGCTGGAAGCTCCGGTGTTCACGATACAGTAGTA 18478 Query 19633 AATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGC 19692 |||||| | || |||| | || |||||| | ||| | |||||||| |||||||| || Sbjct 18479 AATCAAATTTTGACAAAGATGGATGGTGTTGATCAATTAAATAATATATTAGTTATCGGT 18538 Query 19693 ATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATA 19752 ||||| |||||| || | || || || || ||| |||| ||| | ||||| || Sbjct 18539 ATGACAAATAGAAGAGATATGATTGATGAAGCTTTGTTAAGACCTGGTAGAATGGAAGTA 18598 Query 19753 AAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACA 19812 | || ||||| ||||| |||||| ||| ||||| |||||||| ||||||| ||| Sbjct 18599 CAAATGGAAATATCATTACCAGATGAAAATGGTCGTGTACAAATTTTACACATACACACA 18658 Query 19813 TCAACCATGCGACAAAATAACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCG 19872 || ||| || || | || |||| | ||||| ||| || ||||| | || | Sbjct 18659 GGAAAGATGAGAGAATTTGACAAATTAAGTCCTGATGTTGATTTAAAAGAATTAGCTAAG 18718 Query 19873 GCTACCAAAAACTATAGCGGCGCAGAACTTGAGGGATTAGTGAGGGCCGCCCAATCAATT 19932 || ||||| | || || || | || || ||||| || || || ||||||| | Sbjct 18719 AAGACAAAAAATTTCTCTGGTGCTGAGTTGGAAGGTTTAGTTAGAGCAGCTCAATCAAGT 18778 Query 19933 GCAAT 19937 || || Sbjct 18779 GCTAT 18783 >seq39 Length=206625 Score = 172 bits (190), Expect = 4e-38 Identities = 516/776 (66%), Gaps = 38/776 (5%) Strand=Plus/Minus Query 43825 ACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAG 43883 |||| |||| | | ||||||||| || | || || |||||||| ||| || || | Sbjct 49409 ACAATGAAAGATACTTTATATCTCGTGTCCTAGCCTTCTTTGCTGCTTCCGATGGAATTG 49350 Query 43884 TCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTT 43943 ||||||||||||||||| | ||| | ||||||| ||| | || |||||||| | | Sbjct 49349 TCAATGAAAATTTGGTTGAAAGATTTTCAAAAGAAGTCCAAGTCCCTGAAGCACGTTTCT 49290 Query 43944 TTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC----AGTCTTCTG 43999 ||||||| ||||||||||| || || ||||||||| || ||||| ||| | Sbjct 49289 TTTATGGATTTCAAATTGCTATGGAGAATATTCATAGTGAGATGTATTCCAAGT----TA 49234 Query 44000 ATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACA 44059 || || || || ||| || | || | || | || ||||| || ||| Sbjct 49233 ATTGAAACATATATCCGTGACACTGATGAAAGAAATAAGCTTTTCAATGCTTTA---ACA 49177 Query 44060 GTACCTGCGATTAAACATAAAGCAGACTG---GGCCCTTAA-ATGGATAAAT--TCA-AA 44112 | || ||| | || ||| || ||| || | |||| |||||| || | | || Sbjct 49176 GAGTTTGA-ATTTATCAAGAAGAAGGCTGATTGGGCTTTAAGATGGATTAACGATAAGAA 49118 Query 44113 TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG 44172 || |||||||||||||| || | || ||||| | ||| ||||| || || || || || Sbjct 49117 TGCATCTTTTGGAGAACGTATTATTGCTTTTGCCGCTGTTGAAGGAATATTTTTCTCTGG 49058 Query 44173 ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTC 44232 || ||||| | || ||||||||||| ||||| || || ||||| || ||| ||| Sbjct 49057 TTCTTTTGCTTCAATCTTTTGGTTAAAAAAACGTGGATTAATGCCAGGTTTGTGTCATTC 48998 Query 44233 AAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGG 44292 |||||| ||||| | |||||||| |||||| | ||||||||||| | | || | Sbjct 48997 AAATGAATTAATCTCCAGAGATGAAGGATTACATAGAGATTTTGCTTGTCTCATGTTTAG 48938 Query 44293 ATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACA-GATATTGTTGTAGAGGCAG 44351 ||||| |||| |||| || || |||| | | || || || || | | || | Sbjct 48937 TTATCT-TGAGA--ATAAACCGTC-TGTAGAGCGTGTGCATGAAATAATTAGAAATGCTG 48882 Query 44352 TAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATG 44411 | | || || | |||| | | || || | ||||| || | || || |||||| Sbjct 48881 TCGAAATTGAGAAGGAATATTTAACTGATGCTCTTCCTGTTGATATGATTGGTATGAATT 48822 Query 44412 AACTTTTGA--TGAACCAATATATTGAATACATTGCAGATCGTTTACTTTT---GGAACT 44466 | || | || ||| || |||||||| |||| |||| ||||| ||||| Sbjct 48821 CAAGATTAATGTGTACC--TACATTGAATATGTTGCTGATC---ACCTTTTAACTGAACT 48767 Query 44467 -GGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGT 44525 ||| | ||| |||| || |||| || |||||||| |||| ||| |||| Sbjct 48766 AAACATGCCA-AAAATTTATAAGGTTAAAAATCCATTTGATTTCATGGTAAACCTTTCAA 48708 Query 44526 TGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGA-ATGGG 44580 | ||||| || ||||| || |||||||| ||| |||||||| || ||||| Sbjct 48707 TTGAAGGAAAGACAAATTTCTTTGAAAAGAAAGTTTCTGAATATCAAAGATATGGG 48652 >seq24 Length=311514 Score = 125 bits (138), Expect = 6e-24 Identities = 374/574 (65%), Gaps = 10/574 (2%) Strand=Plus/Plus Query 40695 CCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGGTTT 40754 ||| || | || ||||| | || ||||||||||| |||| |||||| |||| |||||| Sbjct 228388 CCGCTGATTACAACAAAGAGAACATTTTGGAAAGGGATTGTTGAAGAATTGTTGTGGTTT 228447 Query 40755 ATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAATGCG 40814 || ||| |||||||||| ||| || | |||| || || | |||||| | | Sbjct 228448 ATTTCTGGTAGTACTAATGCGAAGGTTTTGACTGAAAAGGGTGTCAAGATTTGGGAACCT 228507 Query 40815 CACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGATCTT 40874 | || || | || ||| || | ||||| ||| | || || ||| | Sbjct 228508 AATGGTAGTAGACAATTCTTGGATAATCTTGGATTTACAGAACGACCAGAGGGAGATTTA 228567 Query 40875 GGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTACTCT 40934 ||||| ||||| |||||||| | | ||||||||||||| |||||||| | | | Sbjct 228568 GGTCCAGTTTACGGATTTCAATGGAGACATTTTGGAGCTAAATATGAAGGAGTTGATGCC 228627 Query 40935 GATTATACCAATAAAGGAATGGATCAATT---ACAGTGCGTTATAGATACGATTAAATCC 40991 ||||| || || ||| | |||||||| ||| ||| | ||| |||||| Sbjct 228628 GATTACACAGGAAAGGGAGTTGATCAATTGGCTCAG---GTTGTTGATCAAATTAAAAAT 228684 Query 40992 GATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATG 41051 | || ||| ||| | ||||| || | || ||||| || | || | |||| ||| Sbjct 228685 AACCCAGATTCTCGAAGAATAATCTTATCAGCATGGAATCCTTCTGATCTTGATTTAATG 228744 Query 41052 GCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGT 41111 | | || || || ||| || ||| ||||| ||| |||| || | ||| Sbjct 228745 GTTCTCCCTCCATGCCATACTTTGGTTCAATTTTATGTTCAAGATGGAGAGTTAAGCTGT 228804 Query 41112 CAATTGTATCAAAGATCAGGTGACATG--GGACTAGGGGTCCCGTTTAACATAGCGAGTT 41169 |||||||||||| | ||| || ||| ||||| || || || || || || || || Sbjct 228805 CAATTGTATCAACG--CAGTGGAGATGTAGGACTTGGAGTTCCTTTCAATATTGCTTCTT 228862 Query 41170 ATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTC 41229 | |||| || || ||||| | ||| | | || || | ||||| ||||||| Sbjct 228863 ACTCTCTTCTGACTCATATGCTAGCAAAAATATGTGGATTGGAAGCAGGTGATTTTGTTC 228922 Query 41230 ACACGTTAGGAGATGGACATATTTACATTAATCA 41263 |||| | ||||||| || ||||||| ||||| Sbjct 228923 ACACTATTGGAGATGCTCACATTTACAGCAATCA 228956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397447232369050