Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq15 210 2e-49 >seq15 Length=622252 Score = 210 bits (232), Expect = 2e-49 Identities = 928/1452 (64%), Gaps = 58/1452 (4%) Strand=Plus/Minus Query 130541 TTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGCCATGTCGAGCATGGTT 130600 || || ||||| ||||||||||| |||| || | || |||||||| || | || | Sbjct 204773 TTAAGTGATTGAGATTGATCAATGTAAGCTCCACGATCAGCAGCCATCTCAA---TGATA 204717 Query 130601 TTATTTTTC---ATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTGTTTGGGTATGCGC 130657 | |||| || |||||| | ||||| || || ||| | || ||| | ||||| | Sbjct 204716 TCCTTTTGAGAAATTTCCCAAACAGTCTTATAAAGTTCCTTGATATGTGTTGGTATTCCA 204657 Query 130658 GCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGCATACTTTTATCGT-- 130715 || || ||||| ||| || || | ||||||||| || |||| || || Sbjct 204656 GCGATATTTTGAATTGAACCATTATTTGATATAATTTCATT---CATAACTTCTTCACTC 204600 Query 130716 -ACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCA 130774 |||| ||| | | | |||||| | | |||| ||||| ||||| || || ||| Sbjct 204599 CACAAGTTAAGGTCAATCAAATCTTTAAGAAGATGAGGATTAACAATTTGGAAGTCTCCA 204540 Query 130775 GCCAGGACGCGTCTAACGTAAATGT--TGCTCGTGAACGGTTCAAAGGATTCGTTGTTGC 130832 | || || || | |||||| | | || | ||||||| ||||| || || | Sbjct 204539 GAGAGAACACGACGT--GTAAATATATTAGAAGTATATGGTTCAATAGATTCATTATTCC 204482 Query 130833 CGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGAC 130892 | | ||||| || |||| || || ||||| || | ||| || ||||| | | || Sbjct 204481 CTAGAATTTGGGCAGTAGAAGCAGTTGGCATTGGAGCTAATAAAAGGGAATTTCTTACAC 204422 Query 130893 CGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTA---GGTTTGA 130949 | ||| | | |||||| |||||||| | |||||||||||| || || ||| | | Sbjct 204421 CATGCTTGGCAATTTTTTCCTTCAATTTAGCCCAATCCCATA---AGTTACTTGGTGTTA 204365 Query 130950 CATTGTTCCACATATCAAATTGTAGTATGCCTTTA----CTGGCGGGACTGGATTCGAAC 131005 |||| |||||||||| |||||| || |||||| |||| | | ||| | Sbjct 204364 CATT---CCACATATCATATTGTAAAATTCCTTTAGAAACTGGTGATCCATGAT----AT 204312 Query 131006 GATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAA 131065 | ||| || ||| || | ||| | ||| | ||| ||||||||||| | |||| Sbjct 204311 GTTTCATATGGTCCATCCTTAGCAGCTAATTCGCAGGAAGCCTCCAAAGCTCCATGATAA 204252 Query 131066 ATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTG-GTTGCTCTCGTAAGGAAATTT 131124 || ||||| ||||| ||||| | || ||| || | | | | | | | ||| || | Sbjct 204251 ATAGTTTCAAAAATTTTCTTATTAAGTTCTTTGGCCCGAGGAGATGT-GAATGGATATCT 204193 Query 131125 CATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGTTTTAA 131184 ||| | |||||| || || | || || | |||| || | || | |||| | || Sbjct 204192 CATAAGCATAAAACAATCAGCTAATCCTTGAACACCAATTCCAATGGGGCGATGTCTAAA 204133 Query 131185 ATTACATTTACGCGAACATTCGGTG--GGATAAAGGTTAATGTCAATTATTTTGTTTAAA 131242 || |||| | | | ||| |||||| || | ||||| ||||| || ||| Sbjct 204132 GTTTGATTTCTTTG--CCTCAGGTACAGGATAATAATTGACATCAATAATTTTATTCAAA 204075 Query 131243 TTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACG-----TGCCAG 131297 || | | ||| | | || | | || | |||| ||| | |||| Sbjct 204074 TTTTTAGCAAGAATCTTAGAAACAAGATGAAGTTGATTAAAATTAAATGATGGTTGCCCT 204015 Query 131298 TT-TCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCG 131356 || || | | || ||| ||| | ||||| | | ||||||||| || ||| Sbjct 204014 TTCTCAATATCAACGAATCTATTCAATGCAATTGATCCTAAATTACAAACAGCAACTTCA 203955 Query 131357 TCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAA 131416 || | | ||||| | ||||||||| | || | |||| | || || || ||||| Sbjct 203954 TCTGGAGCACAATATTCAACAATTTCAGTACAAAGATTAGAACATTTAATTGTTCCCAAG 203895 Query 131417 TTTTGTTGATTGCTTTTAGCATTCACATGGTCCTTGTACATCATGTAGGGCGTGCCCGTT 131476 ||||||||||| ||||| ||| ||| |||||||| | ||| || || || || ||| Sbjct 203894 TTTTGTTGATTACTTTTTCTATTACAATGATCCTTGTAAACCATATATGGAGTTCCAGTT 203835 Query 131477 TCGACTTGAGTTTCAATAATGTATCGAAAGAGTTTTCGAGCAGACAATTGATATTTGTAT 131536 || | |||| ||||| ||| | | | | | | ||| | ||| | | |||| Sbjct 203834 TCTATTTGACTTTCACAAATCTTTTGCCAAATAACCCTAGCCTTGATTTGTTTTCTGTAA 203775 Query 131537 TGGCCGCGTTTT----TCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCA-AACGAAC 131591 ||| | | || || ||| |||||| ||||||| | | || ||| | | Sbjct 203774 ----CGCTTCTCAGTCTCATACTTTGTGTACAATTTTTCAAATTCATCCCCCCAACAATC 203719 Query 131592 TGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTC 131651 | || || |||||||| |||||||| | ||||| | | |||||| | Sbjct 203718 T-TCTAATCCTGGACATTCATGAGGACACATCAATGACCAATATGAATCTTTTTCAACAC 203660 Query 131652 GCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTT 131711 | |||||||||||||| || |||||||| | || || | ||| | ||| || ||||| Sbjct 203659 GTTTCATAAACAAATCAGGAACCCATAAACCATAGAATAAATCACGAGCACGTTCCTCTT 203600 Query 131712 CTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCA 131771 ||| || || |||| || | || ||||| |||| ||| || |||||||| ||||||| Sbjct 203599 CTGGTCCTGTATTTTTCTTAAGATCCAAAAATTCCATAATATCTGCATGCCATGGTTCCA 203540 Query 131772 AATACACTGCCATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGT 131828 |||| | ||| | || || | |||| || ||||||| ||||| | | | | Sbjct 203539 AATAAATTGCAAAAGCTCCAGGTCTCTTATTTCCACCTTGATCAACATATCTTGCAGTAT 203480 Query 131829 TGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGT 131888 ||||| | || | |||||| || |||| || || | ||||||| || | ||| Sbjct 203479 TGTTGAAAACTCTCAACATTGGTACCAATCCATTTGATGTTCCATTAGTTCCACCAATAA 203420 Query 131889 AGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGA 131948 | |||||||| | || ||||| || | |||||||||||| | |||| || | Sbjct 203419 ATGATCCATTGGCACGAATACAATGAACATTTAATCCAATACCTCCAGCAGATTTTGAAA 203360 Query 131949 TTAGTGCGCATT 131960 ||| || |||| Sbjct 203359 TTAAAGCACATT 203348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424925026212720