Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_027995.1 Length=41666 Score E Sequences producing significant alignments: (Bits) Value seq148 82.4 2e-11 >seq148 Length=19139 Score = 82.4 bits (90), Expect = 2e-11 Identities = 176/260 (68%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 41185 TCATTGGCAACTTAGGCAACGATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTG 41244 |||| ||||| | ||| ||| || |||||||||| || | ||||| | || | Sbjct 676 TCATCGGCAATCTGGGCCGCGACCCGGAAATCCGTTCGCTGAACAACGGCGACCGCGTCG 617 Query 41245 CTAATCTAAGCATCGCCACAACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAG 41304 | || || |||||||||| | |||| |||| || || ||||||||||| || | Sbjct 616 CCAACCTGCGCATCGCCACCTCGGAAACCTGGCGCGACAAGGCCACCGGCGAGCGCAAGG 557 Query 41305 AACAAACGGAATGGCACCGCGTTGTCATCTTC---GGTAAGCTGGCAGAAATTGCT-AGC 41360 || | || || |||||| |||||||||||| | || || || || | ||| ||| Sbjct 556 AAAAGACCGAGTGGCACTCGGTTGTCATCTTCAATGAGAACCTCGCCAAAGTGGCTGAGC 497 Query 41361 GAATACCTGCGCAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGG 41420 | || ||| || ||| |||||| | || ||||| || | || ||||| ||| Sbjct 496 -AGTATCTGAAGAAGGGTTCCAAGGTTTATATCGAAGGTGCACTCCAGACACGTAAGTGG 438 Query 41421 CAGGACCAGGCTGGCGTTGA 41440 ||||| ||| ||||| || Sbjct 437 CAGGATCAGCAGGGCGTCGA 418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133206736826160