Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq11 87.8 2e-12 seq7 87.8 2e-12 >seq11 Length=1024817 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 177271 TACGAGGGAGCTACGGTTCTTGAAGCACAAAAGGGTGCATACTATACTCCAATTACTGCT 177330 || ||||||||||| ||| ||||| || || ||| || || |||||| || | Sbjct 441788 TATGAGGGAGCTACTGTTATTGAACCAATAAGAGGTTTTTATAATGAACCAATTGCTACA 441847 Query 177331 CTTGATTTTGAAGCACTGTATCCATCAATTATGATGGCACACAATCTATGCTATTCGTCA 177390 |||||||||| |||| ||||||||||||||||| ||||| ||||| || ||| | ||| Sbjct 441848 CTTGATTTTGCTTCACTATATCCATCAATTATGATTGCACATAATCTTTGTTATACTTCA 441907 Query 177391 T 177391 | Sbjct 441908 T 441908 >seq7 Length=1063407 Score = 87.8 bits (96), Expect = 2e-12 Identities = 247/371 (67%), Gaps = 10/371 (3%) Strand=Plus/Plus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 |||||| || ||||| | | || || ||| | ||||| || ||||| ||||| || Sbjct 752924 ATCAAATCGTCCCGGTCTTAAAAGAGCACTATCCAAAATATCTACACGATTTGTGGCAGC 752983 Query 11512 AATAACCACAATGCCAGTCTCAT-TGTC--AAAGCCATCCATCTCGGTGAGTAATTGATT 11568 ||||| | || || || | ||| ||| |||||||| || || | |||||| Sbjct 752984 TATAACGATAACTGAAGATTCTTCTGTTGTAAATCCATCCATTTCAACAAGGAGTTGATT 753043 Query 11569 AATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACC---AGCACTGCG-TTGCTTGC 11624 | ||| | |||| ||| || | ||||||||| | |||| | || ||| | Sbjct 753044 CAATGTATTTTCTTGTTCAGAATGACCACCCATACCACCTTTACCACTTCTCTTTCTT-C 753102 Query 11625 CCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAA 11684 | || |||||||| |||||||| || | ||||||||| ||||| | || ||| ||| Sbjct 753103 CTACAGCATCAATTTCATCAATAAATAAAATACATGGAGAATTTTTTCTAGCCATTGCAA 753162 Query 11685 AGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAG 11744 | | ||| ||||| || | || || ||||||||||| || | ||| | | ||| Sbjct 753163 ACATATCACGAACTCTAGCAGGTCCTACTCCAACAAACATTTCTAAAAATTCAGATCCAG 753222 Query 11745 A-GCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTT 11803 | || | || ||||| ||||| | |||||| || | ||| || || | || || Sbjct 753223 ATACAGT-AATAAATGGAACATTAGCTTCACCAGCTGTAGCTTTAGCAAGTAATGTTTTA 753281 Query 11804 CCCGTACCTGG 11814 || || ||||| Sbjct 753282 CCAGTTCCTGG 753292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628017790776000