Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5 100 3e-16 >seq5 Length=1449561 Score = 100 bits (110), Expect = 3e-16 Identities = 295/447 (66%), Gaps = 16/447 (4%) Strand=Plus/Plus Query 104206 TGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGA 104265 ||| ||| || ||| ||||| | | || ||||| || || | ||||||||||| || Sbjct 1211990 TGTATTGTTG-AAAGACCACAACATCTTTTTATGCGTGTTGCTGTTGGTATTCATGGAGA 1212048 Query 104266 AGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGC 104325 ||| ||||| ||||| | || ||||| || ||||| ||| ||| | || || Sbjct 1212049 AGATATTGAATCTGTACTTGAAACATATAACTGTATGTCTCAAAAATGGTTTTTACATGC 1212108 Query 104326 AACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTAT 104385 | ||||||| | | ||||| || ||||||| | ||| |||| || || |||| Sbjct 1212109 ATCACCAACATTATATAATGCAGGAACACCAAAAGGACAATTGTCATCATG-TTTTTTAT 1212167 Query 104386 CGCCAACAA----GGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGC 104441 ||||| ||| || ||||| | ||||| |||| ||||||| | ||||| Sbjct 1212168 ---TAACAATGGTGGATGATTCAATAGAAGGTATTTATGATACTCTTAAAAATTGTGCTA 1212224 Query 104442 AAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAAT 104501 ||| ||||| | || || || |||| | | || || | | |||| || Sbjct 1212225 TAATTTCAAAAGGTGCAGGTGGAGTTGGTCTAAGTGTTAATAATATTCGTGCCACAGGAT 1212284 Query 104502 CTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTA-TTCCAATGCTTCGCGTATTT 104560 || |||| | || |||||||| ||| |||| |||| |||| ||| | || |||||| Sbjct 1212285 CTTTTATTAGTGGAACAAATGGAATTTCAAATGG-ATTAGTTCCTATGTTACGAGTATTT 1212343 Query 104561 AACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGT 104616 || | || || || ||||| |||||| ||| | |||| ||| | | || | Sbjct 1212344 AATGATACTGCTCGTTATGTTGATCAAGGTGGAAAT-AAAAGACCAGGAGCATTTGCTAT 1212402 Query 104617 CTATCTTGAGCCATGGCACGCGGATAT 104643 ||| |||| |||||||| || ||||| Sbjct 1212403 TTATATTGAACCATGGCATGCAGATAT 1212429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583247603724400