Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 5e-16 >seq4 Length=1570035 Score = 98.7 bits (108), Expect = 5e-16 Identities = 288/434 (66%), Gaps = 15/434 (3%) Strand=Plus/Minus Query 64898 CCAATACCCTTTGAGCCATTTATTAAAATCATCGGAATAATTGGTGCATA-AAAGATAGG 64956 |||||||| || || ||||| | ||||| ||| || || ||||| |||| |||||| || Sbjct 413855 CCAATACCTTTAGAACCATTAACTAAAACCATTGGTATTATTGGAACATAGAAAGAT-GG 413797 Query 64957 CTCAACAATGAGACCATCATCATCCAAATACTTCAAAATGGCATCATCCTCTTTTGGAAA 65016 |||| ||| ||| ||||||| | ||| | || | ||||||||||||||||||| Sbjct 413796 TTCAATAATTTGACTTTCATCATTAAGATATTCTAATAAATCATCATCCTCTTTTGGAAA 413737 Query 65017 TATAGAACGAGTTATTTTATTCAATTGAGTATAAATATATCTTTCGGATGCGTGGTCTTG 65076 || | ||||| | ||| ||||||||||| ||| | ||| || | Sbjct 413736 TAATATTCTTGTTATAGATTCCAAACTTGTATAAATATACCTTCCACTTGCAGCATCATC 413677 Query 65077 TCCA---GTTCGTCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGA 65133 |||| || || || ||||| ||||| |||| | | | |||||| || | Sbjct 413676 TCCACCTGTAGTTCTGGTACCAAATTGACCTATTGGTTTGAGGAGATTAATGTTACCACA 413617 Query 65134 ACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTA--AACTCGCTTCACCGTGA 65191 |||| |||||| || ||||| | ||||| | ||| || | |||||| ||| Sbjct 413616 GCCAACAAAATTTTGTGCCATCTTTACGATTGCATCTGTTAGGAATT--TTTCACCATGA 413559 Query 65192 TGATATCCTGAATGTTCAG-AGACATATCCACTAAATTGAGCAACTTTTATTTC--CGTT 65248 ||||| |||||| | || | | | ||| |||||| || |||||||| |||| Sbjct 413558 TGATACAATGAATGATGAGCTGTCGCA-CCAGCTAATTGATTTACCTTTATTTCTTCGTT 413500 Query 65249 GTTAAATTCTTTTTAAATGCAGAATACAATATTTTCCGTAAACTAATTTTCAATCCATCC 65308 | |||| |||||||| | ||| | || || ||| ||| || || || ||||| Sbjct 413499 TTCAAAT--TTTTTAAACATTGTATAAAGAATCTTACGTTGACTTATCTTTAACCCATCA 413442 Query 65309 ATTAAATTAGGAAT 65322 | | |||||| || Sbjct 413441 ACCACATTAGGTAT 413428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235674801046500