Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq547 150 2e-31 seq29 150 2e-31 seq82 129 7e-25 seq641 98.7 1e-15 >seq547 Length=3469 Score = 150 bits (166), Expect = 2e-31 Identities = 177/238 (74%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| | || || ||||| || |||||||||||||| | Sbjct 1593 ATGCAGATTTTTGTTAAGACTTTAACTGGAAAGACAATCACTCTTGAGGTTGAACCTTCC 1534 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | ||| | || ||||| || ||||| || || ||||||||||| Sbjct 1533 GATACTATTGACAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATCCCTCCAGACCAA 1474 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||||||||| |||||||| || |||| | || || | || |||||| Sbjct 1473 CAACGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAAT 1414 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAAA 27643 | ||||| ||||| || ||||| | || | |||||||| |||||| || ||| || Sbjct 1413 ATTCAAAAAGAATCAACCCTTCACTTGGTTCTCCGTCTTCGTGGTGGA-AATTTTCAA 1357 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| | || || || || ||||||||||| ||||| || Sbjct 1822 AATGCAAATTTTTGTTAAGACTTTAACTGGAAAAACAATTACTCTTGAAGTTGAACCATC 1763 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | || | || | || ||||| ||||| || ||||| || ||||| || Sbjct 1762 TGACACTATCGACAACGTCAAATCCAAGATTCAAGACAAAGAAGGAATCCCACCAGATCA 1703 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||||| || ||||| || || ||||| || |||| | || || | ||||| || Sbjct 1702 ACAACGTCTTATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAA 1643 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || ||||| ||||| || | |||||||| || || Sbjct 1642 CATCCAAAAGGAGTCAACTCTCCATCTCGTTCTCCGTCTTCGTGGAGG 1595 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| | || || |||||||| || ||||| |||||| | Sbjct 2254 ATGCAAATCTTTGTTAAGACTTTGACAGGGAAGACTATAACGCTTGAAGTTGAGCCTTCA 2195 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | |||||||| || ||||| ||||| |||||||| |||||||| Sbjct 2194 GACACTATTGATAACGTCAAGGCTAAGATCCAGGATAAGGAAGGAATTCCACCAGACCAA 2135 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 || | |||| ||||| |||| Sbjct 2134 CAAAGATTAATCTTTGCAGGTA 2113 >seq29 Length=268433 Score = 150 bits (166), Expect = 2e-31 Identities = 177/238 (74%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| | || || ||||| || |||||||||||||| | Sbjct 198542 ATGCAGATTTTTGTTAAGACTTTAACTGGAAAGACAATCACTCTTGAGGTTGAACCTTCC 198483 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | ||| | || ||||| || ||||| || || ||||||||||| Sbjct 198482 GATACTATTGACAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATCCCTCCAGACCAA 198423 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||||||||| |||||||| || |||| | || || | || |||||| Sbjct 198422 CAACGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAAT 198363 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAAA 27643 | ||||| ||||| || ||||| | || | |||||||| |||||| || ||| || Sbjct 198362 ATTCAAAAAGAATCAACCCTTCACTTGGTTCTCCGTCTTCGTGGTGGA-AATTTTCAA 198306 >seq82 Length=59906 Score = 129 bits (142), Expect = 7e-25 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||||||||| ||||| || ||||| ||||| ||||| |||||||| |||||| || Sbjct 47738 ATCATGCAAATCTTCGTCAAAACTCTTACTGGCAAAACTATCACTCTTGAAGTTGAGCCA 47797 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| |||| ||| | ||| ||||||| || || ||||| ||||||||||| ||| Sbjct 47798 TCCGATACTATTGATAATGTCAAGTCTAAAATCCAAGAGAAGGAAGGAATTCCTCCTGAC 47857 Query 27523 CAGCAGCGTCTAATTTTTGCTGGT 27546 || || || || || ||||||||| Sbjct 47858 CAACAACGCCTCATCTTTGCTGGT 47881 >seq641 Length=2967 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| ||| | |||||||| ||| | | Sbjct 284 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATTGCCCTTGAGGTGGAGCCGAGC 343 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| || | ||||||| || || || |||||||| || || ||||| ||||| Sbjct 344 GATTCGATCGACGCCGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCTCCTCACCAG 403 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || | || ||||| || | || || | || || || || || || ||| Sbjct 404 CAGCGCCTGGTCTTCGCTGGAGTGCTGTTGGAAGACGGGCGCACGCTTGCTGATTACAAT 463 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGC 27619 |||| ||||| ||| || || || | |||| Sbjct 464 ATCCAGAAGGAGAGCACGCTCCACCTGATTTTGC 497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570297496727200