Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq858 107 2e-18 >seq858 Length=1962 Score = 107 bits (118), Expect = 2e-18 Identities = 172/247 (70%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 29893 CAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGAC 29952 ||| || | ||| ||||| || | | ||||||| || || ||||| || ||||| ||| Sbjct 1652 CAGATACAGGTGGGCGTCGCCGAAGGTGTGGACGAAATCGCCCGGCTCCAGCCCCACGAC 1711 Query 29953 GTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCC 30012 | |||| ||||| |||||| || | |||| ||||||||| || || ||||| || Sbjct 1712 CTTGGCCAGCATGTGCGTGAGCAGGGCGTAGGAGGCGATGTTGAACGGCACCCCTAGGAA 1771 Query 30013 CATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTG 30072 || || | || | || || ||||| || |||| ||||||| ||| | || || Sbjct 1772 CACATCGGCTGAGCGTTGATACAGCTGGCAGCTCAGCTTTCCGTCGGCGACGAAGAATTG 1831 Query 30073 ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCA 30132 ||| | |||||| || || || |||||| | ||| || ||||||||||||| Sbjct 1832 GAACAGGCAGTGGCAGGGCGGCAGCGCCATGTCGTCCACATCGGCCGGGTTCCAGGCGCT 1891 Query 30133 CACGATG 30139 |||||| Sbjct 1892 GACGATG 1898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406301437046520