Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq547 140 3e-28 seq82 87.8 2e-12 seq641 86.0 5e-12 seq28 82.4 7e-11 >seq547 Length=3469 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| | || || || | |||||||||||||| ||||| || Sbjct 1821 ATGCAAATTTTTGTTAAGACTTTAACTGGAAAAACAATTACTCTTGAAGTTGAACCATCT 1762 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| || ||||||||||||||||| || ||||| |||||| Sbjct 1761 GACACTATCGACAACGTCAAATCCAAGATTCAAGACAAAGAAGGAATCCCACCAGATCAA 1702 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||||| |||||| | ||||| | || | || || |||||| Sbjct 1701 CAACGTCTTATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAAC 1642 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || | ||| | ||| | ||| | || || || || Sbjct 1641 ATCCAAAAGGAGTCAACTCTCCATCTCGTTCTCCGTCTTCGTGGAGGTAT 1592 >seq82 Length=59906 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || |||||||| || ||||| |||| ||||||||||| || || || Sbjct 47740 CATGCAAATCTTCGTCAAAACTCTTACTGGCAAAACTATCACTCTTGAAGTTGAGCCATC 47799 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | ||||| ||||| ||||| || ||||| || || || || || Sbjct 47800 CGATACTATTGATAATGTCAAGTCTAAAATCCAAGAGAAGGAAGGAATTCCTCCTGACCA 47859 Query 27107 ACAGCG 27112 ||| || Sbjct 47860 ACAACG 47865 >seq641 Length=2967 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 || |||||||| || || || || |||||||||||| | ||| | ||||| ||||| ||| Sbjct 281 GCGATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATTGCCCTTGAGGTGGAGCCG 340 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 ||| ||||| || || || || || |||||||| |||||||| || || | Sbjct 341 AGCGATTCGATCGACGCCGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCTCCTCAC 400 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || ||||| | | | ||| || | ||||||||| | || || | |||||| Sbjct 401 CAGCAGCGCCTGGTCTTCGCTGGAGTGCTGTTGGAAGACGGGCGCACGCTTGCTGATTAC 460 Query 27165 AACATTCAAAAGGAG 27179 || || || |||||| Sbjct 461 AATATCCAGAAGGAG 475 >seq28 Length=270198 Score = 82.4 bits (90), Expect = 7e-11 Identities = 116/162 (72%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 26969 ATTTTTTAATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTAC 27028 ||||||| || | ||| ||||| || || || || ||||| || || ||| |||| || Sbjct 52788 ATTTTTT--TTCAGACGAGATGCAAATTTTCGTTAAGACTCTTACTGGTAAGACTATCAC 52731 Query 27029 TCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGA 27088 ||||||||| || || || || | || |||| || ||| || || ||||| || || Sbjct 52730 TCTTGAAGTCGAGCCATCAGATACCATCGAGAATGTAAAAGCCAAGATCCAAGATAAGGA 52671 Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAA 27130 ||| || || || ||||| || ||| | || | ||||| || Sbjct 52670 AGGTATCCCTCCAGATCAGCAACGTCTTATCTTTGCCGGTAA 52629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434908559971200