Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq138 145 3e-30 >seq138 Length=21122 Score = 145 bits (160), Expect = 3e-30 Identities = 266/383 (69%), Gaps = 14/383 (4%) Strand=Plus/Minus Query 5823 CGACCTGACCGTCTCCACCGGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCATCCACCA 5882 ||| |||||| || | |||||| || || ||||| |||||||||||||| | | Sbjct 2889 CGAGCTGACCTTCGGCGTCGGCCCGGCGGGCACGGGCAAGACCTTCCTGGCGGCGGCCTA 2830 Query 5883 CGGCCTGCGCCTGCTGGAGGCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCCCGCCGT 5942 |||| ||||||| || ||| || | | || || ||||||||||| || || || Sbjct 2829 CGGCGCCTCCCTGCTGAAGCGGGGGCAGGTGGACCGGCTGGTCATCACCCGCCCGGCGGT 2770 Query 5943 TGAGGCAGATGAGAAGCTCGGCTTCCTGCCCGGCACTGTGGACGAGAAGATGGCACCCTA 6002 ||||| | |||||| || ||||| ||||| ||| | || | || ||| | | ||||| Sbjct 2769 CGAGGCGGGTGAGAATCTGGGCTTTCTGCCAGGCGATATGAAGGAAAAGGTTGACCCCTA 2710 Query 6003 CCTCACCCCGATGCTGGACGCGGTGATCGA---CCTGGTCG-GCCCGACGATGACGAAGC 6058 || ||||||| ||| || ||| ||| ||||| || | ||||| || || | Sbjct 2709 TCTGGCCCCGATCTGGGAGTCGCTGAACGACATCCTGGGCGTGGACGACG-TG-CG--CC 2654 Query 6059 GCCTCCTCGAGTCGCGCCAGCTGGAGGTCGCCCCGCTGGCCTACATGCGAGGCCGGACGT 6118 ||| || |||| | | || | |||| |||||| | |||| |||||| ||||| ||| Sbjct 2653 GCCGCCGCGAGAAGGGGGAGATCGAGGCCGCCCCCATCGCCTTCATGCGCGGCCGCACGC 2594 Query 6119 TCAACGACACGTACATCGTCGCTGACGAGATGCAGAACGCCACCCCGCGC---CAGACCG 6175 ||| | || | | |||| ||| || ||| |||||| |||| ||||| |||| Sbjct 2593 TCAGCCACGCCTTCATCATCGTCGATGAGGCGCAGAA---CACCTCGCGCATGCAGATGA 2537 Query 6176 CGCTGCTGGTGACCCGCCTGGGC 6198 | || || |||||||||||||| Sbjct 2536 AGATGGTGCTGACCCGCCTGGGC 2514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191483884204800