Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value seq182 307 5e-79 >seq182 Length=14523 Score = 307 bits (340), Expect = 5e-79 Identities = 480/686 (70%), Gaps = 3/686 (0%) Strand=Plus/Minus Query 66473 ACCGGCTCTATCGCTCTGGACGGCGCCCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTG 66532 |||||||| | | || ||| || || |||||||| || ||| ||||||||| Sbjct 8877 ACCGGCTCGCTGGGCCTCGACATGGCGCTCGGCATCGGCGGCCTGCCGGTCGGCCGGGTG 8818 Query 66533 GTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCC 66592 | || | | |||||| ||||| || || ||| | || || || ||| | |||||| Sbjct 8817 ATCGAGGTGTTCGGCCCCGAATCCTCGGGCAAGACGACGCTCGCCCTGCACACCGTGGCC 8758 Query 66593 AATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCT 66652 | | |||||| || ||| ||||||| | ||||||| || ||| | |||||||| Sbjct 8757 GAGGTCCAGAAGAAGGGCGGCGTGGCCGCCTTCGTCGACGCCGAACACGCGCTGGACCCG 8698 Query 66653 GAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCCGATACC 66712 | || || | ||| || || |||| ||| |||| ||||| |||||||| || Sbjct 8697 GTCTATGCGCAAAAGCTGGGCGTCAACCTGGACGACCTGCTGGTGTCGCAGCCCGACACG 8638 Query 66713 GGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTC 66772 ||||||||||| ||||||||||| ||| ||| || || |||| || |||||| Sbjct 8637 GGCGAGCAGGCGCTGGAGATCGTCGACACCCTGGTGCGCTCGGGCGCCGTGGACATCGTG 8578 Query 66773 GTCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGAC 66832 || || ||||| || || |||||| ||| ||||| || |||||||||| || || ||| Sbjct 8577 GTGGTCGACTCGGTCGCCGCCCTGACGCCACGCGCGGAAATCGAAGGCGAGATGGGCGAC 8518 Query 66833 AGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCGCAAGCTCACTGGCACC 66892 || | ||||||||| || ||||| ||||| |||||| ||||||| || || | | | Sbjct 8517 AGCCTGCCCGGCCTGCAGGCCCGCCTGATGTCGCAGGCCCTGCGCAAACTGACGGCCTCG 8458 Query 66893 ATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAAC 66952 ||||||| | || | || | |||||||| | || | ||||||||| | Sbjct 8457 ATCTCCAAGTCGAAGTGCATCGTCCTGTTCATCAACCAGATCCGTCACAAGATCGGCGTC 8398 Query 66953 GTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCA 67012 || |||||| || ||||| || |||||||| || || ||| |||||||||||| Sbjct 8397 ATG---TACGGCTCGCCCGAGACGACGACGGGCGGCAATGCGCTGAAGTTCTACGCCTCG 8341 Query 67013 GTCCGTATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAAC 67072 || || | || |||| |||| || | | ||| | |||| |||| ||||||||| Sbjct 8340 GTGCGCCTCGACATCCGCCGCACCGGCGCGATCAAGAACCGCGACGAGGTCGTCGGCAAC 8281 Query 67073 CGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAATGCCGAGTTC 67132 |||||| || ||||| |||||||||||| | || |||||| |||| | | | ||| Sbjct 8280 ACCACCCGCGTCAAGGTGGTCAAGAACAAGGTCGCTCCGCCGTTCCGCGAGGTCATCTTC 8221 Query 67133 TCCGTCGTGTACGGGGAGGGCATCTC 67158 | || ||||||| || |||||||| Sbjct 8220 GACATCATGTACGGCGAAGGCATCTC 8195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242855442642540