Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq858 98.7 1e-15 >seq858 Length=1962 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 78490 ATATGCGTCAGGAGAGCGTAGGAGGCGATATTGAACGGCAACCCTAAGAAGACATCAACC 78549 || ||||| || || |||||||||||||| |||||||||| ||||| ||| ||||| | Sbjct 1722 ATGTGCGTGAGCAGGGCGTAGGAGGCGATGTTGAACGGCACCCCTAGGAACACATCGGCT 1781 Query 78550 GAACGCTGATACCACTGTAGAGACAGTTTACCGTTGATTACGACGAACTGGAAGAAACAG 78609 || || |||||| ||| ||| || |||| | |||| ||| ||||| | ||| Sbjct 1782 GAGCGTTGATACAGCTGGCAGCTCAGCTTTCCGTCGGCGACGAAGAATTGGAACAGGCAG 1841 Query 78610 TGACACGGACGCAATGCCATTTTATCCAGATCAACAGGGTTCCATGCGGAAACGATG 78666 || || || ||| ||||| | |||| ||| | |||||||| ||| |||||| Sbjct 1842 TGGCAGGGCGGCAGCGCCATGTCGTCCACATCGGCCGGGTTCCAGGCGCTGACGATG 1898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568460738284800