Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq24 174 1e-38 >seq24 Length=311514 Score = 174 bits (192), Expect = 1e-38 Identities = 224/309 (72%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 126056 TAATTGTGTATGTATTGCATCCATATGATTGGAATAAATATGTGCATCTCCAAATGTATG 126115 ||||||||| | || || || | ||||||| ||||| || |||||||||| || || Sbjct 228981 TAATTGTGTCTTTAGAGCTTCAACATGATTGCTGTAAATGTGAGCATCTCCAATAGTGTG 228922 Query 126116 AATGAATTCACCCACCTCAAGTCCACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATA 126175 || || ||||| | || | ||||||| |||||| | | ||| ||||| | || || Sbjct 228921 AACAAAATCACCTGCTTCCAATCCACATATTTTTGCTAGCATATGAGTCAGAAGAGAGTA 228862 Query 126176 ACTTGCAATATTGAAAGGAACACCTAAAAATATATCAGCACTTCTTTGATATAATTGACA 126235 | ||||||||||||||||| || | || ||| |||| | |||||| |||||||| Sbjct 228861 AGAAGCAATATTGAAAGGAACTCCAAGTCCTACATCTCCACTGCGTTGATACAATTGACA 228802 Query 126236 ATTTAATTTACCCTCTTGTACGTAAAATTGAAACATTGTGTGGCAAGGTGGTAATGCCAT 126295 |||| | || ||||| || |||||||||| || || ||||| || || | |||| Sbjct 228801 GCTTAACTCTCCATCTTGAACATAAAATTGAACCAAAGTATGGCATGGAGGGAGAACCAT 228742 Query 126296 TGAATCGATTTCAGTAGGATTCCATGCTGAAACAATGTGACGTCGAGAGTTTGGATTGGT 126355 | |||| | |||| ||||||||||||||| | || | |||||| | ||| || | Sbjct 228741 TAAATCAAGATCAGAAGGATTCCATGCTGATAAGATTATTCTTCGAGAATCTGGGTTATT 228682 Query 126356 TTTAATTTG 126364 ||||||||| Sbjct 228681 TTTAATTTG 228673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408589386574670