Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq858 132 4e-26 >seq858 Length=1962 Score = 132 bits (146), Expect = 4e-26 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 6546 GCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAA 6605 |||| | |||||||| || | || || || || || || || || | || || || Sbjct 1639 GCTCCAGATGGTTCAGATACAGGTGGGCGTCGCCGAAGGTGTGGACGAAATCGCCCGGCT 1698 Query 6606 CCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACG 6665 ||| ||||||||| | || | ||||| ||||||||| ||||| || |||||||||| Sbjct 1699 CCAGCCCCACGACCTTGGCCAGCATGTGCGTGAGCAGGGCGTAGGAGGCGATGTTGAACG 1758 Query 6666 GCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCG 6725 ||||||||| || || | || |||||||| ||||||||| ||||| || | | Sbjct 1759 GCACCCCTAGGAACACATCGGCTGAGCGTTGATACAGCTGGCAGCTCAGCTTTCCGTCGG 1818 Query 6726 CGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCAT 6768 ||||| |||||||| | ||| |||||| || || |||||||| Sbjct 1819 CGACGAAGAATTGGAACAGGCAGTGGCAGGGCGGCAGCGCCAT 1861 Score = 132 bits (146), Expect = 4e-26 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCC 34636 |||||||| || || |||||| ||| | |||||||| |||||| | || ||||| | Sbjct 1861 ATGGCGCTGCCGCCCTGCCACTGCCTGTTCCAATTCTTCGTCGCCGACGGAAAGCTGAGC 1802 Query 34637 TGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGT 34696 |||||||| |||||||| || | || || ||||||||||||||||||| || Sbjct 1801 TGCCAGCTGTATCAACGCTCAGCCGATGTGTTCCTAGGGGTGCCGTTCAACATCGCCTCC 1742 Query 34697 TACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTG 34756 ||||| ||||||||| ||||| | || | ||||||||| ||| || || || | || Sbjct 1741 TACGCCCTGCTCACGCACATGCTGGCCAAGGTCGTGGGGCTGGAGCCGGGCGATTTCGTC 1682 Query 34757 CATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGC 34799 || || || || || || || | || |||||||| | |||| Sbjct 1681 CACACCTTCGGCGACGCCCACCTGTATCTGAACCATCTGGAGC 1639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448252258063200