Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq547 86.0 4e-12 >seq547 Length=3469 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| || ||| | ||||| ||| ||||| |||| || ||| | Sbjct 1822 AATGCAAATTTTTGTTAAGACTTTAACTGGAAAAACAATTACTCTTGAAGTTGAACCATC 1763 Query 27849 CGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | | |||| |||||| || || ||||||||||| | || || Sbjct 1762 TGACACTATCGACAAC--GTCAAATCCAAGATTCAAGACAAAGAAGGAATCCCACCAGAT 1705 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||||| | || ||||||||||||||| | || || | | | | | || || ||| Sbjct 1704 CAACAACGTCTTATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTAC 1645 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| ||| ||| | ||| | ||| | ||| | ||||| || Sbjct 1644 AACATCCAAAAGGAGTCAACTCTCCATCTCGTTCTCCGTCTTCGTGGAGG 1595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355854549897870