Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq547 179 9e-40 seq29 179 9e-40 seq641 104 5e-17 seq82 95.1 3e-14 seq28 89.7 1e-12 >seq547 Length=3469 Score = 179 bits (198), Expect = 9e-40 Identities = 173/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||| || || |||||||| || |||||||| | ||| || Sbjct 1372 ACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAAAGAGT 1431 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||||||||||| || ||||| || || || ||||| ||||||||||| ||||| | || Sbjct 1432 TCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGGATACC 1491 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| || || |||||| || ||||| || || || || || ||||||||| || Sbjct 1492 TTCCTTATCTTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACCTCAAG 1551 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| |||||||| || | |||||| ||||| | |||||| Sbjct 1552 AGTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCAT 1593 Score = 168 bits (186), Expect = 2e-36 Identities = 173/226 (77%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || || || ||||| ||||| ||||||||||| || || | || Sbjct 1597 TCCACGAAGACGGAGAACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCAGAGAG 1656 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || ||||||||||| || || || || || |||||||| |||||||| || || || | Sbjct 1657 AGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATAAGACGTTGTTGATCTGGTGGGAT 1716 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||| ||||| || ||||| ||| ||||| ||||| |||||||| |||||| || Sbjct 1717 TCCTTCTTTGTCTTGAATCTTGGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTC 1776 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || ||||| || | |||||| ||||| | |||||| Sbjct 1777 AAGAGTAATTGTTTTTCCAGTTAAAGTCTTAACAAAAATTTGCATT 1822 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||| ||||| | | ||||||||| || |||| ||||||||| ||||||||||| Sbjct 2115 CCTGCAAAGATTAATCTTTGTTGGTCTGGTGGAATTCCTTCCTTATCCTGGATCTTAGCC 2174 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||| || || ||||| || ||||| || || || || ||||| || || | | Sbjct 2175 TTGACGTTATCAATAGTGTCTGAAGGCTCAACTTCAAGCGTTATAGTCTTCCCTGTCAAA 2234 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| ||||| | ||||| Sbjct 2235 GTCTTAACAAAGATTTGCAT 2254 >seq29 Length=268433 Score = 179 bits (198), Expect = 9e-40 Identities = 173/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||| || || |||||||| || |||||||| | ||| || Sbjct 198321 ACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAAAGAGT 198380 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||||||||||| || ||||| || || || ||||| ||||||||||| ||||| | || Sbjct 198381 TCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGGATACC 198440 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| || || |||||| || ||||| || || || || || ||||||||| || Sbjct 198441 TTCCTTATCTTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACCTCAAG 198500 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| |||||||| || | |||||| ||||| | |||||| Sbjct 198501 AGTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCAT 198542 >seq641 Length=2967 Score = 104 bits (114), Expect = 5e-17 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 ||||| || ||| ||| || ||||| || ||||| ||||| || | || ||||||| | Sbjct 489 AGGTGGAGCGTGCTCTCCTTCTGGATATTGTAATCAGCAAGCGTGCGCCCGTCTTCCAAC 430 Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 || || ||||||| ||||| || |||| |||||| | ||||||||||| |||||| Sbjct 429 AGCACTCCAGCGAAGACCAGGCGCTGCTGGTGAGGAGGGATGCCTTCCTTGTCTTGGATC 370 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTT 211085 || |||||| ||||| | || ||| || ||||| || | || ||||| Sbjct 369 TTCGCCTTCACGGCGTCGATCGAATC---GCTCGGCTCCACCTCAAGGGCAATGGTCTTG 313 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| || || | |||||| Sbjct 312 CCGGTCAGGGTCTTGACGAAGATCTGCAT 284 >seq82 Length=59906 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || ||||| |||||||||||||||||||||| ||||||||| || ||||| || Sbjct 47880 CCAGCAAAGATGAGGCGTTGTTGGTCAGGAGGAATTCCTTCCTTCTCTTGGATTTTAGAC 47821 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || || || || || || ||||| || |||||||| || || || || ||| Sbjct 47820 TTGACATTATCAATAGTATCGGATGGCTCAACTTCAAGAGTGATAGTTTTGCCAGTAAGA 47761 Query 211095 GTCTTTACAAACACCTGCAT 211114 || || || || | ||||| Sbjct 47760 GTTTTGACGAAGATTTGCAT 47741 >seq28 Length=270198 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 139807 CTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAG 139866 |||||||||||||| || |||| || ||||||||| | ||||||| | || ||| Sbjct 138525 CTTCCAAAGAAGCATGGTCGAGGTGGTCAATCTGCTGTCCGTTTTGCTCGTCTAAGAACT 138466 Query 139867 GAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAAA 139926 || ||| | ||||| ||| | ||||||||||| || ||| | || ||||| ||| Sbjct 138465 GAGAAGCGTCACAATTACGTTAGAAAAGTTGCTGAAGTTGCAGTTGAGATGTTTATAAAA 138406 Query 139927 GACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAG 139986 | | || ||||| |||| | |||| |||||||| || || |||||||| || Sbjct 138405 AATGATAAAGTAATTGTTGCTGGATTAATTTTAGCAGGTTCTGCTGATTTCAAGACTGAG 138346 Query 139987 CT 139988 || Sbjct 138345 CT 138344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159125118540650