Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq547 123 2e-23 seq29 100 2e-16 >seq547 Length=3469 Score = 123 bits (136), Expect = 2e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| ||||| || | || |||||||| || ||||| |||||||| | | Sbjct 1822 AATGCAAATTTTTGTTAAGACTTTAACTGGAAAAACAATTACTCTTGAAGTTGAACCATC 1763 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || | | ||| || ||| ||||||||||| | || |||||||| Sbjct 1762 TGACACTATCGACAACGTCAAATCCAAGATTCAAGACAAAGAAGGAATCCCACCAGATCA 1703 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || |||||||| |||||||| ||||| | | | ||| | || ||||| Sbjct 1702 ACAACGTCTTATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAA 1643 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| ||||| ||||| || | ||| | ||| Sbjct 1642 CATCCAAAAGGAGTCAACTCTCCATCTCGTT 1612 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| || | || ||||| || |||||||| || ||||| | | Sbjct 1593 ATGCAGATTTTTGTTAAGACTTTAACTGGAAAGACAATCACTCTTGAGGTTGAACCTTCC 1534 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||| | | || ||| ||| || || |||||| | || ||||| ||| Sbjct 1533 GATACTATTGACAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATCCCTCCAGACCAA 1474 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| || || ||||| ||||| | | | ||| | ||||| || Sbjct 1473 CAACGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAAT 1414 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || |||||||| || || | || || ||| Sbjct 1413 ATTCAAAAAGAATCAACCCTTCACTTGGTT 1384 >seq29 Length=268433 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| || | || ||||| || |||||||| || ||||| | | Sbjct 198542 ATGCAGATTTTTGTTAAGACTTTAACTGGAAAGACAATCACTCTTGAGGTTGAACCTTCC 198483 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||| | | || ||| ||| || || |||||| | || ||||| ||| Sbjct 198482 GATACTATTGACAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATCCCTCCAGACCAA 198423 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| || || ||||| ||||| | | | ||| | ||||| || Sbjct 198422 CAACGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAAT 198363 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || |||||||| || || | || || ||| Sbjct 198362 ATTCAAAAAGAATCAACCCTTCACTTGGTT 198333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338002143719480