Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq547 143 6e-29 seq29 143 6e-29 seq171 122 2e-22 seq583 113 1e-19 seq4 107 5e-18 seq819 102 2e-16 seq641 102 2e-16 seq355 98.7 2e-15 seq400 95.1 3e-14 seq365 95.1 3e-14 seq28 93.3 1e-13 seq82 91.5 4e-13 seq129 84.2 5e-11 >seq547 Length=3469 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| || || ||||||||||| | ||| ||||| | | ||| Sbjct 1372 ACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAAAGAGT 1431 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| |||||||| || ||||| ||||| || ||||| ||||||||||| || || ||||| Sbjct 1432 TCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGGATACC 1491 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||| |||||| ||| || || || || || || | ||| || || | Sbjct 1492 TTCCTTATCTTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACCTCAAG 1551 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| ||||| || || ||||| || Sbjct 1552 AGTGATTGTCTTTCCAGTTAAAGTCTT 1578 >seq29 Length=268433 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| || || ||||||||||| | ||| ||||| | | ||| Sbjct 198321 ACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAAAGAGT 198380 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| |||||||| || ||||| ||||| || ||||| ||||||||||| || || ||||| Sbjct 198381 TCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGGATACC 198440 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||| |||||| ||| || || || || || || | ||| || || | Sbjct 198441 TTCCTTATCTTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACCTCAAG 198500 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| ||||| || || ||||| || Sbjct 198501 AGTGATTGTCTTTCCAGTTAAAGTCTT 198527 >seq171 Length=16149 Score = 122 bits (134), Expect = 2e-22 Identities = 200/287 (70%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 7444 TTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATA 7503 || ||| | || |||||| | |||||||| | |||||| || ||||| ||||| Sbjct 4339 TTGTATCTTATTTTTGGTTTGTGATCTGGTATGGTTGGTACTTGTTTGTCTATAATTATT 4280 Query 7504 AGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAAC 7563 | | || |||||| || |||| || || | ||| || | || | || || Sbjct 4279 CGTATTGAGTTAGCTAAACCAGGTTATC-----TTCTG-GGTGATGGTCAGTTATATAAT 4226 Query 7564 GTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATA 7623 | || | || || ||||| || | |||||||| ||| | ||||| || |||||| Sbjct 4225 TCTGTTTTGACTGCTCATGCTATTTTGATGATTTTTTTTATGGTTATACCTAGTATGATT 4166 Query 7624 GGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCA 7683 || ||||| || |||||| | ||||||||||| | || || |||||||| ||||||| Sbjct 4165 GGTGGTTTTGGTAATTGAATGGTTCCTTTAATATTGGGAGCCCCTGATATAAGTTTTCCA 4106 Query 7684 AGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 | | || ||||| |||||||||||| |||| |||| ||||||| Sbjct 4105 CGTTTAAATAATATTAGTTTTTGATTATTACCTACTTCTATATTTCT 4059 Score = 122 bits (134), Expect = 2e-22 Identities = 200/287 (70%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 7444 TTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATA 7503 || ||| | || |||||| | |||||||| | |||||| || ||||| ||||| Sbjct 5726 TTGTATCTTATTTTTGGTTTGTGATCTGGTATGGTTGGTACTTGTTTGTCTATAATTATT 5667 Query 7504 AGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAAC 7563 | | || |||||| || |||| || || | ||| || | || | || || Sbjct 5666 CGTATTGAGTTAGCTAAACCAGGTTATC-----TTCTG-GGTGATGGTCAGTTATATAAT 5613 Query 7564 GTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATA 7623 | || | || || ||||| || | |||||||| ||| | ||||| || |||||| Sbjct 5612 TCTGTTTTGACTGCTCATGCTATTTTGATGATTTTTTTTATGGTTATACCTAGTATGATT 5553 Query 7624 GGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCA 7683 || ||||| || |||||| | ||||||||||| | || || |||||||| ||||||| Sbjct 5552 GGTGGTTTTGGTAATTGAATGGTTCCTTTAATATTGGGAGCCCCTGATATAAGTTTTCCA 5493 Query 7684 AGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 | | || ||||| |||||||||||| |||| |||| ||||||| Sbjct 5492 CGTTTAAATAATATTAGTTTTTGATTATTACCTACTTCTATATTTCT 5446 >seq583 Length=3271 Score = 113 bits (124), Expect = 1e-19 Identities = 102/127 (80%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||||| ||||| ||| ||||||||||||||||||||||||| | | | | Sbjct 2870 GGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATACTCCACCGCTTGTGCGGGCCCC 2929 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG-AATATTTACGCG 7855 ||||| || |||||||||| |||||||||| |||| | | |||| || | || ||||| Sbjct 2930 CGTCAATTCCTTTGAGTTTCAACCTTGCGGCCGTACTCCCCAGGCGGTCAACTTCACGCG 2989 Query 7856 TTAGCTT 7862 ||||||| Sbjct 2990 TTAGCTT 2996 >seq4 Length=1570035 Score = 107 bits (118), Expect = 5e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||||||||| || ||||||||||| || || |||||||| |||||||| Sbjct 1075307 GAAGATTTGACCATCAGTAATTGAAATAACATTTGTTGGAATGTAAGCAGATACATCACC 1075366 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAA 4576 ||||| ||||| | ||| || | || || ||||| ||||| |||| Sbjct 1075367 AGCTTGAGTTTCAATAACTGGAAGAGCGGTAAGTGAACCACCTCCAA 1075413 >seq819 Length=2095 Score = 102 bits (112), Expect = 2e-16 Identities = 100/128 (78%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||| | |||| ||| ||||||||||||| |||| |||||| | | | | Sbjct 1405 GGTAAGGTTCCTCGCGTATCATCGAATTAAACCACATGCTCCTCCGCTTGTGCGGGCCCC 1346 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGCG 7855 ||||| || |||||||||| | |||||||| |||| | | ||||||||||| || |||| Sbjct 1345 CGTCAATTCCTTTGAGTTTCACCCTTGCGGCCGTACTCCCCAGGTGGAATACTTAACGCT 1286 Query 7856 TTAGCTTA 7863 || ||||| Sbjct 1285 TTCGCTTA 1278 >seq641 Length=2967 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 |||||||| ||| || || |||| ||||||||| || | || | ||| ||||| | | Sbjct 489 AGGTGGAGCGTGCTCTCCTTCTGGATATTGTAATCAGCAAGCGTGCGCCCGTCTTCCAAC 430 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 || |||||||||| || || || |||| || || || |||||||||||||||||| Sbjct 429 AGCACTCCAGCGAAGACCAGGCGCTGCTGGTGAGGAGGGATGCCTTCCTTGTCTTGGATC 370 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || |||||| || ||||| | || | ||||| || | | || |||||||| Sbjct 369 TTCGCCTTCACGGCGTCGATCGAATCGCTCGGCTCCACCTCAAGGGCAATGGTCTTGCCG 310 Query 225688 GTCAAAGTTTTTATGAACACTTGCAT 225713 |||| || || | ||| | ||||| Sbjct 309 GTCAGGGTCTTGACGAAGATCTGCAT 284 >seq355 Length=6091 Score = 98.7 bits (108), Expect = 2e-15 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| || || ||||| ||||| || || || |||||||||||||| |||||||| ||||| Sbjct 5484 GAAAATCTGTCCATCTGTAATCGAAATTACGTTTGTAGGGATATATGCAGAAACGTCACC 5543 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACC 4571 || || ||||| | || ||||||||||||| |||||| || Sbjct 5544 CGCCTGAGTTTCAATAATTGGTAAGGCTGTTAATGATCCGCC 5585 >seq400 Length=5312 Score = 95.1 bits (104), Expect = 3e-14 Identities = 98/127 (77%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| |||| ||||| || ||||||||||||| ||||||||||| | | | Sbjct 1285 TGGTAAGGTTCTGCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 1344 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGC 7854 |||||| || ||||||||||||| |||||| |||| | | |||| ||| | || | || Sbjct 1345 CCGTCAATTCCTTTGAGTTTTAATCTTGCGACCGTACTCCCCAGGCGGATTGCTTAATGC 1404 Query 7855 GTTAGCT 7861 ||||||| Sbjct 1405 GTTAGCT 1411 >seq365 Length=5917 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/139 (76%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783 ||| || || |||||||| ||||| ||||| ||| |||||| || ||| |||| |||| Sbjct 2849 TATGTCAAGCCTTGGTAAGGTTCTTCGCGTTGCATCGAATTAATCCGCATGCTCCGCCGC 2908 Query 7784 TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGG-TG 7842 || | | | |||||| || |||||||||||| |||||||| |||| | | |||| | Sbjct 2909 TTGTGCGGGCCCCCGTCAATTCCTTTGAGTTTTAGCCTTGCGGCCGTACTCCCCAGGCGG 2968 Query 7843 GAATATTTACGCGTTAGCT 7861 | | || | ||||||||| Sbjct 2969 GGAACTTAATGCGTTAGCT 2987 >seq28 Length=270198 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || || |||||||| ||||| || || || || ||||||||||| ||||||||||| Sbjct 52628 CTTACCGGCAAAGATAAGACGTTGCTGATCTGGAGGGATACCTTCCTTATCTTGGATCTT 52687 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||| |||||||| ||||| | || || || | ||||| ||||| || || Sbjct 52688 GGCTTTTACATTCTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGT 52747 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 | ||| || | ||| | |||||| Sbjct 52748 AAGAGTCTTAACGAAAATTTGCAT 52771 >seq82 Length=59906 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||| ||||| || ||||||||||| || ||||| |||||||| |||||||| || | Sbjct 47880 CCAGCAAAGATGAGGCGTTGTTGGTCAGGAGGAATTCCTTCCTTCTCTTGGATTTTAGAC 47821 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| || || || || || | || || || | ||||| || ||||| || | | Sbjct 47820 TTGACATTATCAATAGTATCGGATGGCTCAACTTCAAGAGTGATAGTTTTGCCAGTAAGA 47761 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | ||| | |||||| Sbjct 47760 GTTTTGACGAAGATTTGCAT 47741 >seq129 Length=23434 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/95 (82%), Gaps = 3/95 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| |||| |||||||||||||||||| | ||||||||| || ||| | ||||| Sbjct 23339 TGAGAGGATGACCAGCCACATTGGGACTGAGACACGGCCCAA-ACTCCTACGGGAGGCAG 23397 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGA 6860 |||||| |||| || |||||||||||||| ||| Sbjct 23398 CAGTGGGGAATCTTGCGCAATGGGCGAAAGCCTGA 23432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192503544456140