Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq858 113 4e-20 >seq858 Length=1962 Score = 113 bits (124), Expect = 4e-20 Identities = 182/259 (70%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 29654 TCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCT 29713 |||| |||| || || | ||| || || || | ||||||||| || || ||||| || Sbjct 1641 TCCAGATGGTTCAGATACAGGTGGGCGTCGCCGAAGGTGTGGACGAAATCGCCCGGCTCC 1700 Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 ||||| ||| | |||| ||||| |||||| || | |||| ||||||||| || ||| Sbjct 1701 AGCCCCACGACCTTGGCCAGCATGTGCGTGAGCAGGGCGTAGGAGGCGATGTTGAACGGC 1760 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 ||||| || || || |||| | || || |||||||| |||| ||||||| Sbjct 1761 ACCCCTAGGAACACATCGGCTGAGCGTTGATACAGCTGGCAGCTCAGCTTTCCGTCGGCG 1820 Query 29834 ACGTAAAACTGACACATGGCA-TGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGG 29892 ||| | || || ||| |||| ||||| || || || |||||| ||| || || Sbjct 1821 ACGAAGAATTGGAACA-GGCAGTGGCAGGGCGGCAGCGCCATGTCGTCCACATCGGCCGG 1879 Query 29893 GTTCCAGGCACACACGATG 29911 ||||||||| | |||||| Sbjct 1880 GTTCCAGGCGCTGACGATG 1898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406154240293660