Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq39 239 4e-58 >seq39 Length=206625 Score = 239 bits (264), Expect = 4e-58 Identities = 517/761 (68%), Gaps = 22/761 (3%) Strand=Plus/Plus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 ||| ||| || |||| ||||| || ||| |||||| |||||||| || || ||||| | Sbjct 48649 AACCCCATATCTTTGATATTCAGAAACTTTCTTTTCAAAGAAATTTGTCTTTCCTTCAAT 48708 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACAC-TTTA 4365 |||| ||| |||| |||||||| ||||| | | || ||| ||||| || |||| Sbjct 48709 TGAAAGGTTTACCATGAAATCAAATGGATTTTTAACCTTATAAA-TTTTTGGCATGTTTA 48767 Query 4366 G---AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGT 4422 | || || ||| | ||||| ||| |||| || || | ||| | | | | Sbjct 48768 GTTCAGTTAAAAGGT---GATCAGCAACATATTCAATGTAGGTACACATTAATCTTGAAT 48824 Query 4423 TAATTCCAATTAATCTCA-CAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACG 4481 | || ||||| | | ||| |||| || || | || ||| | || | || || || Sbjct 48825 TCATACCAATCA-TATCAACAGGAAGAGCATCAGTTAAATATTCCTTCTCAATTTCGACA 48883 Query 4482 GCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAAC 4541 || | | | ||||| || | | ||| ||| |||||||| | | || | |||| Sbjct 48884 GCATTTCTAATTATTTCATGCACACGCTCTACAGACGGTTTATTCTCAAGATAACTAAAC 48943 Query 4542 AATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC 4601 | | ||| |||||||| | ||| || ||||| |||||| || | ||| || ||| Sbjct 48944 ATGAGACAAGCAAAATCTCTATGTAATCCTTCATCTCTGGAGATTAATTCATTTGAATGA 49003 Query 4602 GTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAA 4661 || || |||||||| || | ||||| | |||||| || | ||||| || ||||| Sbjct 49004 CACAAACCTGGCATTAATCCACGTTTTTTTAACCAAAAGATTGAAGCAAAAGAACCAGAG 49063 Query 4662 AAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTT-- 4719 || ||||| ||||| || |||||||| || | |||| | | | || || || || Sbjct 49064 AAAAATATTCCTTCAACAGCGGCAAAAGCAA-TAATACGTTCTCCAAA-AGATGCATTCT 49121 Query 4720 TGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTT----AACGCACGGAATTGTG 4775 | || ||||||||| |||| ||||| | ||| || ||||| || || || | || Sbjct 49122 TATCGTTAATCCATCTTAAAGCCCAATCAGCCTTCTTCTTGATAAATTCA---AACTCTG 49178 Query 4776 TATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGT 4835 | || ||| || || | ||| || ||||| | ||| | ||||| || || |||| Sbjct 49179 T-TAAAGCATTGAAAAGCTTATTTCTTTCATCAGTGTCACGGATATATGTTTCAATTAAC 49237 Query 4836 AGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTA 4895 | |||||| ||| ||| ||||| || |||||||| |||||||| |||||| | | Sbjct 49238 TTGGAATACATCTCACTATGAATATTCTCCATAGCAATTTGAAATCCATAAAAGAAACGT 49297 Query 4896 GCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCG 4955 ||||| | ||||| ||||| || |||||||||| || || ||||| || || || || Sbjct 49298 GCTTCAGGGACTTGGACTTCTTTTGAAAATCTTTCAACCAAATTTTCATTGACAATTCCA 49357 Query 4956 TCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTA 4996 || || ||||| || || | ||| ||||||||||||| Sbjct 49358 TCGGAAGCAGCAAAGAAGGCTAGGACACGAGATATAAAGTA 49398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427040179552730