Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_030929.1 Length=49033 Score E Sequences producing significant alignments: (Bits) Value seq607 96.9 1e-15 >seq607 Length=3148 Score = 96.9 bits (106), Expect = 1e-15 Identities = 204/297 (69%), Gaps = 12/297 (4%) Strand=Plus/Plus Query 795 ATGGCTAGGGCCCGCAACATCAAACCCGGAATCATGGCAAACGAAGACCTAGCAGAGCTA 854 ||||| ||| | | |||||||| || || || | | ||||| |||| |||||||| Sbjct 110 ATGGCCAGGTCAAGAAACATCAAGCCAGGGTTCTTCTCGAACGAGCACCTGGCAGAGCTG 169 Query 855 GATCCTCTCG-CTCGCCTGCTGTTCATCTACCTCTGGATGTTGGCCGATCGGGAAGGGCG 913 || | || | ||||||||||||||||| | |||| ||| || ||||||||||| Sbjct 170 GA-CTTCGCCACTCGCCTGCTGTTCATCGGTATGTGGACTGAGGCTGACCGGGAAGGGCG 228 Query 914 CCTTGAGGATCGCCCGAAACG---GATCAAGGCCGAGGCACTTCCCTAC-GACAACGTAG 969 |||||||||||| ||| || || | |||| | ||||| | |||||||| | Sbjct 229 CCTTGAGGATCGTCCGCGCCGCCTGAAAATGGCC----CTGTTCCCGGCTGACAACGTCG 284 Query 970 ACGCTGACTTG-ATGCTGGATGATCTGGCCAAGGCAGGGTTCATCCATCGCTATGAGGCT 1028 || | | | | ||||||||||| |||| | ||||||||| | ||||| | Sbjct 285 AC-ATCAATCGCATGCTGGATGACCTGGATCATTTGGGGTTCATCAAGCGCTACACCGTG 343 Query 1029 GCCGGGGTCAAGCTGATTCAGGTTCTTAACTTTGCCAAGCATCAGACACCTCATGTC 1085 | || || || ||| ||||| | |||| |||||||| |||| || || ||| Sbjct 344 GGCGACGTTAAAGCGATCCAGGTGATCAACTGGGCCAAGCACCAGAACCCACACGTC 400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156780630123900