Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_030948.1 Length=167619 Score E Sequences producing significant alignments: (Bits) Value seq858 84.2 2e-11 seq247 84.2 2e-11 seq200 84.2 2e-11 >seq858 Length=1962 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 122077 GCCCTTCCTCCCTGTCACGTCCTACACCAATACTCAGTAAAGGGCGGAAAACTGCATTGC 122136 || || || ||||| ||| ||| ||||| || || | |||||| ||| ||| Sbjct 1858 GCGCTGCCGCCCTGCCACTGCCTGTTCCAATTCTTCGTCGCCGACGGAAAGCTGAGCTGC 1799 Query 122137 -AGCATGTATCAGCGTTCGGCTGATGCCTTCCTAGGGGTTCCCTTCAATATCGCGTCCTA 122195 ||| ||||||| || || || |||| ||||||||||| || ||||| ||||| ||||| Sbjct 1798 CAGC-TGTATCAACGCTCAGCCGATGTGTTCCTAGGGGTGCCGTTCAACATCGCCTCCTA 1740 Query 122196 CGCCCTCCTAACGCATATCATGGCC 122220 |||||| || ||||| || ||||| Sbjct 1739 CGCCCTGCTCACGCACATGCTGGCC 1715 >seq247 Length=9876 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 85007 TGGTAGGGATGGTGGGACTCGAACCCACACGCCTTTCAGCGCCTGATTTTGAGTCAGGTG 85066 |||| || |||| ||||||||||| |||| |||||| | || ||||||||||| || | Sbjct 3297 TGGTGCGGGTGGTCGGACTCGAACCGACACTCCTTTCGGAACCGGATTTTGAGTCCGGCG 3238 Query 85067 GGTCTACCAATTCCCCCACATCCCCA 85092 ||||||||||||| ||||| || || Sbjct 3237 CGTCTACCAATTCCACCACACCCGCA 3212 >seq200 Length=12912 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 85007 TGGTAGGGATGGTGGGACTCGAACCCACACGCCTTTCAGCGCCTGATTTTGAGTCAGGTG 85066 |||| ||||| ||||||||||||| ||||||| | ||||| ||| | |||| |||| Sbjct 12289 TGGTGCGGATGAGGGGACTCGAACCCCCACGCCTCGCGGCGCCAGATCCTAAGTCTGGTG 12348 Query 85067 GGTCTACCAATTCCCCCACATCCCCA 85092 ||||||||||||| |||||||| || Sbjct 12349 CGTCTACCAATTCCGCCACATCCGCA 12374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 536240667280400