Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_031020.1 Length=163201 Score E Sequences producing significant alignments: (Bits) Value seq567 91.5 2e-13 seq475 84.2 2e-11 >seq567 Length=3368 Score = 91.5 bits (100), Expect = 2e-13 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 66415 CAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTA 66472 ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||| Sbjct 1301 CAGGATTCGAACCTGAGACCTACTGCTTAGAAGGCAGTTGCTCTATCCAGCTGAGCTA 1358 >seq475 Length=4263 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/58 (93%), Gaps = 1/58 (2%) Strand=Plus/Plus Query 66415 CAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTA 66472 ||||||||||||||| |||| |||| ||||||||||||||||||||||| |||||||| Sbjct 2187 CAGGATTCGAACCTGCGACCAACGGATTAGAAGGCCGTTGCTCTATCCA-CTGAGCTA 2243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 522103387143600