Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_031057.1 Length=180219 Score E Sequences producing significant alignments: (Bits) Value seq858 98.7 1e-15 >seq858 Length=1962 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 42314 CATCGTTTCCGCATGGAACCCTGTTGATCTGGATAAAATGGCATTGCGTCCGTGTCACTG 42373 |||||| ||| |||||||| | ||| |||| | ||||| ||| || || ||||| Sbjct 1898 CATCGTCAGCGCCTGGAACCCGGCCGATGTGGACGACATGGCGCTGCCGCCCTGCCACTG 1839 Query 42374 TTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCGGT 42433 | ||||| ||| |||| | |||| || ||| ||| |||||| || || | Sbjct 1838 CCTGTTCCAATTCTTCGTCGCCGACGGAAAGCTGAGCTGCCAGCTGTATCAACGCTCAGC 1779 Query 42434 TGATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCTGACGCATAT 42490 ||||| ||| ||||| |||||||||| |||||||||||||| || || ||||| || Sbjct 1778 CGATGTGTTCCTAGGGGTGCCGTTCAACATCGCCTCCTACGCCCTGCTCACGCACAT 1722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576559755040400