Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq547 170 4e-37 seq29 161 2e-34 seq17 131 4e-25 seq28 127 4e-24 seq641 104 5e-17 seq82 95.1 3e-14 >seq547 Length=3469 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || || ||||| | || || ||||||||||||||||||| Sbjct 1594 ACCTCCACGAAGACGGAGAACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCAGA 1653 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | ||||| || |||||||| ||||||||||| | ||||||||| || || Sbjct 1654 GAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATAAGACGTTGTTGATCTGGTGG 1713 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || || |||||||| ||||| | ||| ||| | ||||||||||| || | ||| || Sbjct 1714 GATTCCTTCTTTGTCTTGAATCTTGGATTTGACGTTGTCGATAGTGTCAGATGGTTCAAC 1773 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||| ||||| || || || || || ||||||||||| || || |||||| Sbjct 1774 TTCAAGAGTAATTGTTTTTCCAGTTAAAGTCTTAACAAAAATTTGCATT 1822 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || |||| || | || ||||||||| || || || |||| | Sbjct 1367 CCACCACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAA 1426 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | ||||| || ||||| || || ||||| || | |||||||||||| || Sbjct 1427 AGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGG 1486 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| ||||| ||||| ||||||| || ||| | || ||||| || |||| ||| || Sbjct 1487 ATACCTTCCTTATCTTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACC 1546 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || || ||||||||||| || |||||||| Sbjct 1547 TCAAGAGTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCAT 1593 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || |||||||| || | ||||||||| ||||| || ||||| || |||||||| || Sbjct 2115 CCTGCAAAGATTAATCTTTGTTGGTCTGGTGGAATTCCTTCCTTATCCTGGATCTTAGCC 2174 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| |||| |||||||| |||| || ||||| || || || ||||| || |||||| Sbjct 2175 TTGACGTTATCAATAGTGTCTGAAGGCTCAACTTCAAGCGTTATAGTCTTCCCTGTCAAA 2234 Query 283080 GTCTTAACGAATATCTGCAT 283099 |||||||| || || ||||| Sbjct 2235 GTCTTAACAAAGATTTGCAT 2254 >seq29 Length=268433 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || |||| || | || ||||||||| || || || |||| | Sbjct 198316 CCACCACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAA 198375 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | ||||| || ||||| || || ||||| || | |||||||||||| || Sbjct 198376 AGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGG 198435 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| ||||| ||||| ||||||| || ||| | || ||||| || |||| ||| || Sbjct 198436 ATACCTTCCTTATCTTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACC 198495 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || || ||||||||||| || |||||||| Sbjct 198496 TCAAGAGTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCAT 198542 >seq17 Length=497611 Score = 131 bits (144), Expect = 4e-25 Identities = 257/380 (68%), Gaps = 0/380 (0%) Strand=Plus/Plus Query 43984 CAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGACT 44043 ||||| || ||||| || | || ||||| ||||| || ||||| |||| ||| | ||| Sbjct 24944 CAAGCATCAACATCTGAACTTTATGGAAAAGTTCAAGAAATTCCACAAAAAGAGACAACT 25003 Query 44044 CCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGATTTGTAAA 44103 || || ||||| | |||||||| | ||| || || | ||||| | |||||| ||| Sbjct 25004 CCATTCTATCCAAGAAGTCCATACGCTGTCGCTAAATTGTATGCATTTTGGATAATAAAA 25063 Query 44104 AATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATTTGTTTCAATCACGAAAGT 44163 |||||||| || | ||||| || || | ||||||| |||| || |||||||| | Sbjct 25064 AATTATCGTGAAGCTTATGGTATCTTTGGTTGTAATGGAATTTTGTTTAATCACGAGTCT 25123 Query 44164 CCCAACAGAGGTCATCAGTTCGTGACTCGTAAAATCACGAAAGCGGTTGCGAATATTTTC 44223 || | |||||| || | || || || | || || || | ||| || || || || Sbjct 25124 CCAAGAAGAGGTAATAATTTTGTTACAAGAAAGATAACTAGAGCTGTAGCTAAAATAAGT 25183 Query 44224 AACGGGACAGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGGATAT 44283 | || | || | | || | |||| || | || ||||| | ||||||||| || Sbjct 25184 ATTGGTGTACAAGAGAGTATATCATTAGGTAATCTTGATGCTAAACGTGATTGGGGACAT 25243 Query 44284 GCCTTGGATTATGTAGAAGCCATGTGGCTGATGTTGCAACAAGACAGGTCAGACGACTAC 44343 || || ||||| ||||| |||||| || | ||||| || | || || | Sbjct 25244 GCACGTGAATATGTTGAAGCTATGTGGAGAATCCTCCAACATGATGTTCCTGATGATTTT 25303 Query 44344 GTTATTGCAACTGGAAAGAC 44363 ||||| ||||| ||||| || Sbjct 25304 GTTATAGCAACAGGAAAAAC 25323 >seq28 Length=270198 Score = 127 bits (140), Expect = 4e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || ||||||||||| | |||||| || || || ||||| ||||| ||||||||||| Sbjct 52629 TTACCGGCAAAGATAAGACGTTGCTGATCTGGAGGGATACCTTCCTTATCTTGGATCTTG 52688 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 |||||||| | ||||| || || || | |||||||| |||||||| |||||||| || Sbjct 52689 GCTTTTACATTCTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTA 52748 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 | |||||||||||| || ||||| Sbjct 52749 AGAGTCTTAACGAAAATTTGCAT 52771 >seq641 Length=2967 Score = 104 bits (114), Expect = 5e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 282893 CAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAG 282952 ||| || | |||||| || || ||||| ||||| |||||||||||||| || || || | Sbjct 490 CAGGTGGAGCGTGCTCTCCTTCTGGATATTGTAATCAGCAAGCGTGCGCCCGTCTTCCAA 431 Query 282953 TTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGAT 283012 | || || |||| || || || |||| | || || || |||||||||||||| Sbjct 430 CAGCACTCCAGCGAAGACCAGGCGCTGCTGGTGAGGAGGGATGCCTTCCTTGTCTTGGAT 371 Query 283013 CTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACC 283072 ||| || || |||| ||||| | || | || || || || | || ||||| || Sbjct 370 CTTCGCCTTCACGGCGTCGATCGAATCGCTCGGCTCCACCTCAAGGGCAATGGTCTTGCC 311 Query 283073 CGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| ||||| ||||| |||||||| Sbjct 310 GGTCAGGGTCTTGACGAAGATCTGCAT 284 >seq82 Length=59906 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || |||||||| | |||||||||||| ||||| || ||||| |||||||| || | Sbjct 47880 CCAGCAAAGATGAGGCGTTGTTGGTCAGGAGGAATTCCTTCCTTCTCTTGGATTTTAGAC 47821 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || |||| ||||| || || | || ||||| |||||||| || || || || | | Sbjct 47820 TTGACATTATCAATAGTATCGGATGGCTCAACTTCAAGAGTGATAGTTTTGCCAGTAAGA 47761 Query 283080 GTCTTAACGAATATCTGCAT 283099 || || ||||| || ||||| Sbjct 47760 GTTTTGACGAAGATTTGCAT 47741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046714925463740