Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq39 311 9e-80 seq1 111 2e-19 >seq39 Length=206625 Score = 311 bits (344), Expect = 9e-80 Identities = 564/814 (69%), Gaps = 16/814 (2%) Strand=Plus/Plus Query 23160 TTAAAAATCTTCATCTAAAGTGAATTTCACTGCTTTATCACTATTCATAACACCCATTT- 23218 ||||||||| |||| || || || | | ||| ||| | |||||| ||||| | Sbjct 48601 TTAAAAATCAGCATCCAAGGTAAAAGTACGTTCTTCTTCAGTGCACATAAC-CCCATATC 48659 Query 23219 TTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTT 23278 |||||||||| ||| |||| || ||||||||||| || || | ||| | ||| Sbjct 48660 TTTGATATTCAGAAACTTTCTTTTCAAAGAAATTTGTCTTTCCTTCAATTGAAAGGTTTA 48719 Query 23279 CCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGATAA-TTCCTTTAAA 23337 |||| |||||||||||||| | ||||| | || |||| | | ||| ||||| Sbjct 48720 CCATGAAATCAAATGGATTTTTAACCTTATAAATTT-TTGGCATGTTTAGTTCAGTTAAA 48778 Query 23338 AGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCAT-AGTTTATACCTATTAG 23396 || ||| || ||| ||||||| || |||||| || || | | || ||||| || | Sbjct 48779 AGGTGATCAGCAACATATTCAATGTAGGTACACATTAA-TCTTGAATTCATACCAATCAT 48837 Query 23397 TTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTAT 23456 | || |||| |||||| ||| || || ||||| ||||||| | ||||||| Sbjct 48838 ATCAACAGGAAGAGCATCAGTTAAATATTCCTTCTCAATTTCGACAGCATTTCTAATTAT 48897 Query 23457 TTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAACAATAAACATGCAAA 23516 || | | | ||| || ||| || | | ||| |||||| | ||| ||||| Sbjct 48898 TTCATGCACACGCTCTACAGACGGTTTATTCTCAAGATAACTAAACATGAGACAAGCAAA 48957 Query 23517 ATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCAT 23576 ||| | ||||| |||||||| || || |||||||| ||| || |||||||| Sbjct 48958 ATCTCTATGTAATCCTTCATCTCTGGAGATTAATTCATTTGAATGACACAAACCTGGCAT 49017 Query 23577 TAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTC 23636 |||||| |||||||| | |||||| |||| |||||| || || || || || || || || Sbjct 49018 TAATCCACGTTTTTTTAACCAAAAGATTGAAGCAAAAGAACCAGAGAAAAATATTCCTTC 49077 Query 23637 AACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAttt 23696 |||||| ||||| || | || |||| ||||| | |||||| | ||| ||||||| | Sbjct 49078 AACAGCGGCAAAAGCAATAATACGTTCTCCAAAAGATGCATTCTTATCGTTAATCCATCT 49137 Query 23697 ttttGTCCAATTAGCCTTCAATTTTACACACTC-AATTGTTTCAATTGCTTTTAAGAGAA 23755 | | ||||| ||||||| || | | | || || | | | || || || || || Sbjct 49138 TAAAGCCCAATCAGCCTTCTTCTTGATAAATTCAAACTCTGTTAA-AGCATTGAAAAGCT 49196 Query 23756 AAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACT----ATACATTTCA 23811 | || |||| ||| | || |||||||| |||||| |||| |||||| ||| Sbjct 49197 TATTTCTTTCATCAGTGTCACGGATATATGTTTCAATT----AACTTGGAATACATCTCA 49252 Query 23812 GAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGA 23871 ||||||||| || |||||||| ||||| |||||||| | | ||||||| | ||| Sbjct 49253 CTATGAATATTCTCCATAGCAATTTGAAATCCATAAAAGAAACGTGCTTCAGGGACTTGG 49312 Query 23872 ACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAG 23931 || || || ||||||||| | | |||||||| || ||||| ||||| |||||||||| Sbjct 49313 ACTTCTTTTGAAAATCTTTCAACCAAATTTTCATTGACAATTCCATCGGAAGCAGCAAAG 49372 Query 23932 AAAGCAAGAACATATTTTATAAAATGTCTTTCAT 23965 || || || ||| |||||| | |||||||| Sbjct 49373 AAGGCTAGGACACGAGATATAAAGTATCTTTCAT 49406 >seq1 Length=6158768 Score = 111 bits (122), Expect = 2e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 139429 GGTGTCCTACATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCT 139488 ||||| ||||||| |||||||||||||||||| | |||||||| |||||||| ||||| Sbjct 2809874 GGTGTTTTACATACGAAATTTTGGATTGTTGATCAAAAACATATTTATATTGGTAGTGCA 2809815 Query 139489 AACATGGACTGGCGATCACTAACTCAAGTAAAAGAATTAGGTATCACAATTTATAATAAT 139548 || ||||| ||| |||| ||||| |||| || ||| | ||| || |||| | || | Sbjct 2809814 AATATGGATTGGAAATCATTAACTGAAGTCAAGGAACTTGGTGTCTTAATTGAAGATTGT 2809755 Query 139549 TCTTGTATTGCTAGTGAACTAATGAAAATATTTA 139582 || ||| | || ||| || |||||||||| Sbjct 2809754 TCCTGTTTAGCACATGATTTACATAAAATATTTA 2809721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521476201334000