Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq22 145 1e-29 seq5 104 3e-17 >seq22 Length=331233 Score = 145 bits (160), Expect = 1e-29 Identities = 466/721 (65%), Gaps = 24/721 (3%) Strand=Plus/Minus Query 155745 GATTGAGCGGCGCGTACCAACCCTTCCAATTCAGCGCCGCTGTAATTTTTAGTTTCAACG 155804 |||||||| || | || || |||||||| ||||| || | ||||||| || | Sbjct 18774 GATTGAGCTGCTCTAACTAAACCTTCCAACTCAGCACCAGAGAAATTTTTTGTCTTCTTA 18715 Query 155805 GCTATTTTATTTAAGTCTACGTCGGAAGCTAATATGTTGTGAGATT---TCATTTTAGCA 155861 |||| || ||||| || || || | | |||| |||| | ||| |||| || | Sbjct 18714 GCTAATTCTTTTAAATCAACATCAGGACTTAAT---TTGTCAAATTCTCTCATCTTTCCT 18658 Query 155862 ACGTGCACCTTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTTC 155921 ||| | | ||||||||| | ||| || |||||||| |||||| ||||| || | Sbjct 18657 GTGTGTATGTGTAAAATTTGTACACGACCATTTTCATCTGGTAATGATATTTCCATTTGT 18598 Query 155922 AATTCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATA 155981 | ||||| | ||||||||||| || ||||| ||||| | || ||| || |||||| Sbjct 18597 ACTTCCATTCTACCAGGTCTTAACAAAGCTTCATCAATCATATCTCTTCTATTTGTCATA 18538 Query 155982 CCTATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATTG 156041 || || | ||| || || ||||| || ||||| || || || | ||| | |||||| Sbjct 18537 CCGATAACTAATATATTATTTAATTGATCAACACCATCCATCTTTGTCAAAATTTGATTT 18478 Query 156042 ACTACGGCGTCGTG-----CGTGGC------GTTAT-CACCGCGTTTTTTACACAGAGCA 156089 ||||| | ||||| || || || | || | || ||||| | |||| Sbjct 18477 ACTACTGTATCGTGAACACCGGAGCTTCCAGCTTGTGTTCCTCTTTGCTTACAAATAGCA 18418 Query 156090 TCTATTTCATCGAAGACGATAACGTGTAATCCGCTGGCT--AAACCCAATTTNNNNNNNN 156147 || |||||||| || | |||| ||||| |||| | ||| || | Sbjct 18417 TCAATTTCATCAAAAATAATAATATGTAA--AGCTGAATTGTTACCACATCTCTTAAATT 18360 Query 156148 NNNNNNNAGCCTCTTGAAACAATCGTCTGACGTTAGCTTCCGATTCACCCACATATTTGT 156207 || ||| ||| ||| ||| | || ||||| |||||| |||||||||| Sbjct 18359 CTTCTTCTGCATCTGCAAATAATTTTCTTATATTGGCTTCACTTTCACCAACATATTTGT 18300 Query 156208 TTAATAATTCAGGACCGTTAACTATTTTGACGGGTCGTG-ATTTAAAAGCTTGAGCGATA 156266 || | || || || ||||| ||||| || | |||||| | || | |||| Sbjct 18299 CTAGAATTTGTGGTCCATTAACAATTTTAGGTTCTCTAGCATTTAACA-TTTTACCGATT 18241 Query 156267 CAGCGAGCCATTAATGTTTTACCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTATA 156326 || || ||||| |||||||| ||||| ||||| || || || | || | | Sbjct 18240 TGACGGGCAATTAAAGTTTTACCTGTTCCAGGTGGTCCATACAATAAGATACCACGAACA 18181 Query 156327 TGTTTACAACCTAATTTTTCAGTTATTTCTACCGGAACTGATCTGGAAGCAAATGCTCTT 156386 ||||| || | || |||| | |||| |||| | |||| | || |||||| Sbjct 18180 TGTTTCATTCCAAGTTGTTCAACTTGTTCTGGAGGAAATAATCTACTAAAGAAGGCTCTT 18121 Query 156387 CGAAAAATGAGAGAAAATTCTTTATCCAATCCCCCCACACCCATTTCCTCAAAATTCCAA 156446 | ||| || ||||||||||||||| || || || | ||||| ||||||| |||| Sbjct 18120 CTAAAGATTGCAGAAAATTCTTTATCTAAACCACCAATTCCCATACTTTCAAAATCCCAA 18061 Query 156447 T 156447 | Sbjct 18060 T 18060 >seq5 Length=1449561 Score = 104 bits (114), Expect = 3e-17 Identities = 114/149 (77%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 63746 TACCAGAAATAGGTGATAAATTTGCTTCTTTTACA-GCTCAAAAAGGTACGTGTGGTATG 63804 ||||| |||| || |||||||||||||| | ||| | |||||||||||| |||||| Sbjct 1209458 TACCACAAATTGGAGATAAATTTGCTTC-TAGACATGGTCAAAAAGGTACCATGGGTATG 1209516 Query 63805 ATTTATCGACAAGAAGATATGCCTTTTACCAAAGACGGTATCGTACCCGATCTCGTCATC 63864 || ||||| |||||||||||||| ||||| ||||| ||| | ||| ||| | | || Sbjct 1209517 ATGTATCGCCAAGAAGATATGCCATTTACAAAAGAAGGTTTATCACCAGATATTATTATT 1209576 Query 63865 AATCCACACGCTTTTCCCAGTCGTATGAC 63893 ||||| || ||| | || ||| ||||| Sbjct 1209577 AATCCTCATGCTGTACCATCTCGAATGAC 1209605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667060107423600