Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq547 185 2e-41 seq29 165 2e-35 seq28 113 1e-19 >seq547 Length=3469 Score = 185 bits (204), Expect = 2e-41 Identities = 165/207 (80%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||| | || |||||||| || || || || || ||| || ||| Sbjct 1818 CAAATTTTTGTTAAGACTTTAACTGGAAAAACAATTACTCTTGAAGTTGAACCATCTGAC 1759 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||||||| |||||||| ||||||||||||||||| || || || ||| Sbjct 1758 ACTATCGACAACGTCAAATCCAAGATTCAAGACAAAGAAGGAATCCCACCAGATCAACAA 1699 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| ||||||||||| || ||||||||||| ||||| | || || ||| || Sbjct 1698 CGTCTTATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAACATC 1639 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || ||||| || ||||| ||| Sbjct 1638 CAAAAGGAGTCAACTCTCCATCTCGTT 1612 Score = 165 bits (182), Expect = 2e-35 Identities = 162/208 (78%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || ||| | || ||||| || ||||| || ||||| ||| || || Sbjct 1590 CAGATTTTTGTTAAGACTTTAACTGGAAAGACAATCACTCTTGAGGTTGAACCTTCCGAT 1531 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||||||||| || || ||||| |||||||| ||||| ||| Sbjct 1530 ACTATTGACAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATCCCTCCAGACCAACAA 1471 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || ||||| || || ||||||||||| |||||| | |||||||| | Sbjct 1470 CGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAATATT 1411 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 |||||||||||||| || || |||| || Sbjct 1410 CAAAAAGAATCAACCCTTCA-CTTGGTT 1384 >seq29 Length=268433 Score = 165 bits (182), Expect = 2e-35 Identities = 162/208 (78%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || ||| | || ||||| || ||||| || ||||| ||| || || Sbjct 198539 CAGATTTTTGTTAAGACTTTAACTGGAAAGACAATCACTCTTGAGGTTGAACCTTCCGAT 198480 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||||||||| || || ||||| |||||||| ||||| ||| Sbjct 198479 ACTATTGACAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATCCCTCCAGACCAACAA 198420 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || ||||| || || ||||||||||| |||||| | |||||||| | Sbjct 198419 CGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAATATT 198360 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 |||||||||||||| || || |||| || Sbjct 198359 CAAAAAGAATCAACCCTTCA-CTTGGTT 198333 >seq28 Length=270198 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || || || || ||||| || || || || ||||| Sbjct 52768 CAAATTTTCGTTAAGACTCTTACTGGTAAGACTATCACTCTTGAAGTCGAGCCATCAGAT 52709 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || ||| ||||| || || || ||||| |||||||| || |||||| Sbjct 52708 ACCATCGAGAATGTAAAAGCCAAGATCCAAGATAAGGAAGGTATCCCTCCAGATCAGCAA 52649 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || |||||||| ||||| || Sbjct 52648 CGTCTTATCTTTGCCGGTAA 52629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203703284721140