Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq641 109 5e-19 >seq641 Length=2967 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 |||||||||| | | || | ||| || ||||||||||||||||| || || || || Sbjct 510 ACCGCCGCCG----GCGGCAAAATCAGGTGGAGCGTGCTCTCCTTCTGGATATTGTAATC 455 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 | || |||||| |||| || | | || || ||||| | ||||||||| |||| | Sbjct 454 AGCAAGCGTGCGCCCGTCTTCCAACAGCACTCCAGCGAAGACCAGGCGCTGCTGGTGAGG 395 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACT 41810 || | || |||||||| ||| || |||| ||| || | | | ||||||| || Sbjct 394 AGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTC-ACGGCGTCGATCGAATCGCTCGGCT 336 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| | | || || || || ||||| ||||| ||||| |||||||| Sbjct 335 CCACCTCAAGGGCAATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462293540372000